Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0458 ATGGCTTCTATCTCTGTTCCTTTCCTCTCTCAGGCACCCACCCACCTTTCAAACTCCACTTCTCTCCGTCTCAAAACCAGGATCTCTGCCACCCCGACTCCGACTCCAACTCCAACCACGGTTGCACCGTCGTCCACGGCGGCGGTGGACGCCTCCAGGATGGAGCCCAGGGTGGAGGAGAGAGGGGGTTACTGGGTTTTGAAGGAGAAGTTCAGGGAAGGTATAAATCCACAGGAGAAGGTGAAGATTGAGAAGGATCCTATGAAGCTCTTCATAGAAGATGGGTTCAATGAGCTGGCCAGCATGTCTTTTGAAGAAATTGAAAAGTCTAAGCATACTAAGGATGATATTGATGTGAGGCTCAAGTGGCTTGGACTGTTTCATAGGAGGAAGCATCAATATGGTAGATTTATGATGAGATTGAAGCTGCCAAATGGGGTGACATCAAGTGCACAAACTCGTTACCTGGCCAGTGCAATAAGGCAATACGGGAAGGAGGGATGTGCCGATGTGACTACGCGGCAAAACTGGCAAATTCGAGGTGTGGTACTGCCTGATGTGCCTGAAATACTAAAGGGTCTTTCAGAGGTTGGTTTGACGAGCCTGCAGAGTGGCATGGACAATGTGAGGAATCCTGTTGGAAATCCTCTTGCAGGCATTGACCCTCATGAGATTGTTGATACACGACCTTACACCAACTTGTTATCCCAATTCATTACTGCCAATGCTCGTGGGAATACAGCCTTCACTAACTTGCCGAGGAAGTGGAATGTGTGTGTTGTAGGCTCCCATGATCTCTATGAGCATCCCCACATCAATGATCTGGCGTACATGCCTGCCACAAAGAAAGGAAGATTTGGATTCAATCTGCTAGTAGGCGGGTTCTTTAGTCCCAAACGTTGTGCTGATGCTATTCCTCTCGATGCCTGGATCCCTGCCGACGATGTCCTCCCAGTTTGTCAAGCAGTACTAGAGGCTTACAGGGATCTTGGTACCAGAGGAAACCGCCAAAAGACAAGAATGATGTGGTTAATTGATGAGCTGGGCATAGAGCAGTTCCGGGCAGAGGTGGTGAAAAGAATGCCCCAACAAGAGCTGGAAAGATCATCTTCTGAAGACCTGGTTCAGAAGCAATGGGAGAGGAGAGATTACCTTGGTGTCCATCCCCAGAAACAGGAAGGCTTTAGCTTTGTGGGTATTCACATTCCAGTGGGTCGAGTCCAGGCAGATGACATGGACGAGCTAGCTCGATTGGCAGACGAATATGGCTCAGGCGAGCTCCGGCTCACTGTAGAGCAGAACATCATAATTCCCAATGTGGAGAACTCAAGACTTGAAGCCTTGCTCAAAGAGCCTCTCTTGAGAGACAGATTCTCTCCGGAGCCTCCTATTCTCATGAAAGGCTTGGTGGCCTGCACCGGCAATCAGTTTTGTGGACAGGCCATTATCGAGACCAAGGCCAGAGCATTGAAGGTGACGGAGGATGTGGGGCGGCTGGTTTCAGTGACCCAGCCAGTGAGGATGCACTGGACCGGCTGCCCAAACTCCTGCGGCCAGGTGCAAGTGGCGGATATCGGATTCATGGGGTGCATGACAAGGGACGAGAATGGGAACGTTTGTGAAGGGGCAGATGTATTCTTAGGAGGTAGAATTGGGAGCGACTGTCATTTGGGAGAGGTTTATAAGAAGCGTGTTCCTTGCAAAGACTTAGTGCCCTTGGTTGCTGAAATTTTGGTAAATCACTTTGGAGGAGTCCCCAGGGAGAGGGAAGAAGAAGCTGAAGACTGA 1788 0.5 MASISVPFLSQAPTHLSNSTSLRLKTRISATPTPTPTPTTVAPSSTAAVDASRMEPRVEERGGYWVLKEKFREGINPQEKVKIEKDPMKLFIEDGFNELASMSFEEIEKSKHTKDDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTSSAQTRYLASAIRQYGKEGCADVTTRQNWQIRGVVLPDVPEILKGLSEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSQFITANARGNTAFTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKKGRFGFNLLVGGFFSPKRCADAIPLDAWIPADDVLPVCQAVLEAYRDLGTRGNRQKTRMMWLIDELGIEQFRAEVVKRMPQQELERSSSEDLVQKQWERRDYLGVHPQKQEGFSFVGIHIPVGRVQADDMDELARLADEYGSGELRLTVEQNIIIPNVENSRLEALLKEPLLRDRFSPEPPILMKGLVACTGNQFCGQAIIETKARALKVTEDVGRLVSVTQPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGNVCEGADVFLGGRIGSDCHLGEVYKKRVPCKDLVPLVAEILVNHFGGVPREREEEAED* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0458 595 Pfam Nitrite and sulphite reductase 4Fe-4S domain 470 578 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vvi3g0458 595 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 27 593 - -
Vvi3g0458 595 Gene3D Sulfite Reductase Hemoprotein, domain 1 198 383 IPR045854 -
Vvi3g0458 595 Pfam Nitrite and sulphite reductase 4Fe-4S domain 206 363 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vvi3g0458 595 MobiDBLite consensus disorder prediction 19 53 - -
Vvi3g0458 595 Gene3D Sulfite Reductase Hemoprotein, domain 1 463 593 IPR045854 -
Vvi3g0458 595 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 388 451 IPR005117 GO:0016491
Vvi3g0458 595 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 131 196 IPR005117 GO:0016491
Vvi3g0458 595 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 342 478 IPR036136 GO:0016491
Vvi3g0458 595 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 511 527 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vvi3g0458 595 Gene3D - 74 455 - -
Vvi3g0458 595 PRINTS Sirohaem Fe-binding site signature 467 485 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vvi3g0458 595 PRINTS Sirohaem Fe-binding site signature 511 529 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vvi3g0458 595 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 467 578 IPR045854 -
Vvi3g0458 595 MobiDBLite consensus disorder prediction 19 47 - -
Vvi3g0458 595 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 54 205 IPR036136 GO:0016491
Vvi3g0458 595 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 206 363 IPR045854 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0458 K00366 - vvi:100253671 1154.81