Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00295 ATGTCGACCTTCGCTGTTCGTTTTCTCACTTCTCCATGCCACCCCGATTCACTGTCTTCTCGCTCCAAGACATGGTGGCTCTCTGCCACCCCTGCGGTGGCTCCGGTCACCTCTGAGGTGGAGGCTTCAAGGTTGGAGCCTAGAGTGGAGGAGAGAGATGGTTTCTGGGTCTTGAAAGAGAAGTTCAGGGCAGGCCTTAATCCTCAGGAAAAGGTGAAGCTTGAGAAAGATCCAATGAAGCTCTTTATGGAAGGTGAGATTCAAGAATTGGCCAAGATGTCTATGGAGGAGCTTGACAGCGCCAAGCACACTAAGGATGATATTGATGTCAGGCTCAAATGGCTCGGCCTTTTTCACAGAAGAAAGAGTCATTATGGTAGATTTATGATGAGATTGAAGCTACCAAATGGGATAACAACGAGTGCACAGACAAGGTACTTAGCGAGCGTGATAAGGAAATATGGGAAAGATGGTTGTGCTGATGTGACCACGAGGCAGAATTGGCAAATCCGAGGTGTGGTTCTGCCTGATGTTCCAGAAATCCTTAAGGGCCTCGCAGAGGTTGGTTTAACGAGTCTGCAGAGTGGCATGGACAATGTTAGAAACCCTGTGGGTAACCCACTTGCTGGCATTGACCCTCATGAGATTGTCGATACCCGGCCTTACAATAACTTGTTATCCCAATTCATCACAGCTAATTCGCGTGGCAACACAACCGTCTCAAACttGCCTAGGAAGTGGAATGTATGTGTGGTGGGCTCCCATGATCTTTATGAGCATCCCCACATCAATGATCTGGCTTACATGCCTGCTAACAAGGATGGTCGATTTGGATTCAATTTGTTAGTGGGTGGTTTCTTCAGTGCCAAGCGATGTGCAGAGGCAGTTCCACTTGATGCCTGGGTCTCAGCAGATGATGTAATCCCAGTGTGCAAAGCTGTTTTGGAGGCCTTTAGGGATCTTGGCTCCAGAGGGAATAGACAGAAAACAAGAATGATGTGGCTAATTGATGAACTGGGCATAGAAGTATTCAGATCAGAGGTAGAAAAGAGAATGCCAGGTGGGAAGCTGAAGAGAGCATCCCAAGAAGACCTGATTCAGAAACAATGGGAAAGGAGGGACTATATGGGTGTTCTTCCACAAAAACAAGAGGGCTTAAGCTATGTCGGGCTTCACATCCCAGTTGGTAGGCTCCAAGCAGATGACATGGATGAGCTAGCTCGTTTAGCAGACGAGTATGGCAGTGGTGAACTCAGGCTCACTGTGGAGCAGAACGTTATAATTCCCAACGTGGATAACTCAAAAAGTGATGCTTTGCTCGAAGAGCCTCTcttgaaagagagattttcaCCCGAACCATCTCTTCTGATGAGGTCACTGGTGGCCTGCACTGGGAACCAGTTTTGTGGGCAAGCCATTATCGAGACAAAGGCCAGAGCTTTGAAAGTGACCGAAGAAGTGGAAAGGCAAGTGGCAGTAACGAGACCAGTGAGAATGCACTGGACAGGGTGCCCCAACACCTGTGGGCAAGTGCAGGTTGCTGATATTGGTTTCATGGGGTGCATGACAAGAGATGAGAATGGCAAATCCTGCGAAGGGGTTGATATTTTCTTGGGAGGGAAAGTTGGGAGTGATTCCCATTTAGGAGATATGTATAAGAAGGGTATCCCTTGCAAGGACTTAGTTCCCATTGTGGTAGACATTCTGATAAACCGTTTTGAAGCTGTCCCAAGGAATAGAGAAGAATTGGAAGATTA 1757 0.4724 MSTFAVRFLTSPCHPDSLSSRSKTWWLSATPAVAPVTSEVEASRLEPRVEERDGFWVLKEKFRAGLNPQEKVKLEKDPMKLFMEGEIQELAKMSMEELDSAKHTKDDIDVRLKWLGLFHRRKSHYGRFMMRLKLPNGITTSAQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYNNLLSQFITANSRGNTTVSNLPRKWNVCVVGSHDLYEHPHINDLAYMPANKDGRFGFNLLVGGFFSAKRCAEAVPLDAWVSADDVIPVCKAVLEAFRDLGSRGNRQKTRMMWLIDELGIEVFRSEVEKRMPGGKLKRASQEDLIQKQWERRDYMGVLPQKQEGLSYVGLHIPVGRLQADDMDELARLADEYGSGELRLTVEQNVIIPNVDNSKSDALLEEPLLKERFSPEPSLLMRSLVACTGNQFCGQAIIETKARALKVTEEVERQVAVTRPVRMHWTGCPNTCGQVQVADIGFMGCMTRDENGKSCEGVDIFLGGKVGSDSHLGDMYKKGIPCKDLVPIVVDILINRFEAVPRNREELED 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00295 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 197 353 IPR045854 -
Bva13g00295 585 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 380 442 IPR005117 GO:0016491
Bva13g00295 585 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 120 188 IPR005117 GO:0016491
Bva13g00295 585 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 1 585 - -
Bva13g00295 585 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 502 518 IPR006066 GO:0016491|GO:0020037|GO:0051536
Bva13g00295 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 457 569 IPR006067 GO:0016491|GO:0020037|GO:0051536
Bva13g00295 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 189 374 IPR045854 -
Bva13g00295 585 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 1 585 - -
Bva13g00295 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 197 352 IPR006067 GO:0016491|GO:0020037|GO:0051536
Bva13g00295 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 456 569 IPR045854 -
Bva13g00295 585 PRINTS Sirohaem Fe-binding site signature 458 476 IPR006066 GO:0016491|GO:0020037|GO:0051536
Bva13g00295 585 PRINTS Sirohaem Fe-binding site signature 502 520 IPR006066 GO:0016491|GO:0020037|GO:0051536
Bva13g00295 585 Gene3D - 65 446 - -
Bva13g00295 585 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 333 469 IPR036136 GO:0016491
Bva13g00295 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 454 584 IPR045854 -
Bva13g00295 585 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 45 196 IPR036136 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00295 Bva-Chr13 1396477 1398851 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00295 K00366 - gmx:100775519 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00295 13 1396477 1398851 Bva13g00295 13 1396477 1398851 ECH