Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1238 Acco10g1298 . Accr4g01463 . Adu08g00161 . . Aed9g0220 Aev08g0196 . Ahy17g2261 Ahy16g0056 Aip07g02413 Aip06g00048 Alju08g1514 . Amo17g2124 . Apr9g0635 Apr5g1659 Arst8g00188 . Bach12g00088 . Bisa09g2062 . Bva06g01902 Bva10g00925 . Car05g03271 Cca05g00370 Cca07g00264 Dere04g0082 . . . Enph1g1048 . Glsi08g2047 . Gma04g00226 Gma06g00208 Gma14g02136 Gma17g02465 Gso4g0210 Gso4g0210 Gso4g0210 Gso4g0210 . . . Lal8g0533 Lal10g0886 Lal25g0528 . . . . . . . . Lasa5g04530 . Lele01g1186 Lele02g1454 Lele03g1201 Lele04g1436 . . . . . Lja5g3325 . Mal2g0477 Mepo3g07846 . . . Mibi05g1404 . . Mtr3g4272 . . Phco7g00282 . Prci8g0753 . . . . . Pte3g01421 . . . . . Pvu9g0177 . . . . . Spst9g00282 . Ssu5g0059 . . Sto9g3704 . Tpr7g0228 Trre5g05686 . . Tsu07g00259 Vian4g02394 . Vifa2g04504 . Vimu10g03490 . Viun9g03679 . Vivi3g00596 . . Vra5g1656
Vvi18g1239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g3705 . . . . . . . . . . . . . . . . . .
Vvi18g1241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1242 . . . . . Adu03g00630 . . . . . . . . . . . . . . . Arst3g00807 . . . Bisa01g4116 . Bva10g00926 . Car05g03432 . . . Dere06g0098 . . . . . Glsi01g0093 . . . . . . . . . . . . . . . . . . . . . Lapu11g00856 . Lasa7g02269 . . . . . . . . . . . . . Mepo2g02465 . Mesa13g02557 . . . . . . . Phco9g00400 . . . Psa5g0075 . Pste1g01387 . . . . . Pumo10g00786 . Pvu11g0354 . Rops3g00437 . . . Spst2g02649 . . Sto5g0131 . . . . Trre7g02618 . . . Vian5g01584 . Vifa6g01041 . Vimu5g02481 . Viun11g02568 . Vivi5g02960 . .
Vvi18g1243 . . . . Adu08g00162 . . Aed9g0219 Aev08g0195 Aev07g0683 Ahy17g2258 Ahy16g0055 Aip07g02412 Aip06g00047 . . Amo17g2121 . Apr9g0637 Apr5g1660 Arst8g00190 . Bach12g00085 . . . Bva06g01901 Bva10g00927 Car04g03591 Car05g03273 Cca05g00075 Cca07g00263 . . Dod08g2282 Dod08g2282 . . . . Gma04g00225 Gma06g00207 Gma14g02138 Gma17g02466 Gso4g0209 Gso4g0209 Gso4g0209 Gso4g0209 Lal4g0064 . . Lal8g0532 . . Lan14g0954 . . Lan14g0954 . . Lapu9g02297 . Lasa5g04705 . . . . . . . . . Lja1g3496 Lja5g3326 Mal1g6077 Mal2g0476 Mepo3g07989 . . . . . Mtr1g0720 Mtr3g4273 Phac9g00072 . Phco7g00281 . . . . Psa5g0301 . . . Pte1g02683 . . . . Pvu9g0179 . Rops10g02472 . Seca4g00415 . Spst9g00279 . . . . . Tpr1g3880 Tpr7g0226 Trre5g05885 . Tsu01g00193 Tsu07g00257 Vian4g02396 . Vifa2g04505 . Vimu10g03493 . Viun9g03681 . Vivi3g00935 . . Vra5g1657
Vvi18g1244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1236 Chr18 12314822 12316170 -
Vvi Vvi18g1237 Chr18 12335563 12336447 +
Vvi Vvi18g1238 Chr18 12337361 12340909 -
Acco Acco10g1298 Chr10 26846480 26849829 -
Accr Accr4g01463 Chr4 14770416 14773641 +
Adu Adu08g00161 Chr08 2458511 2461517 -
Aed Aed9g0220 Chr9 1573658 1577323 +
Aev Aev08g0196 Chr08 1094804 1097868 +
Ahy Ahy17g2261 Chr17 109486631 109489636 +
Ahy Ahy16g0056 Chr16 518273 521909 +
Aip Aip07g02413 Chr07 101657109 101660160 +
Aip Aip06g00048 Chr06 412921 416620 +
Alju Alju08g1514 Chr08 11838919 11842259 +
Amo Amo17g2124 Chr17 110129352 110132385 +
Apr Apr9g0635 Chr9 10338730 10341175 -
Apr Apr5g1659 Chr5 20184454 20187963 -
Arst Arst8g00188 Chr8 2470735 2473743 -
Bach Bach12g00088 Chr12 646830 650064 +
Bisa Bisa09g2062 Chr09 33012821 33014924 -
Bva Bva06g01902 Chr06 12971531 12975053 +
Bva Bva10g00925 Chr10 6951718 6955209 -
Car Car05g03271 Chr05 77457623 77461029 -
Cca Cca05g00370 Chr05 8138306 8140887 -
Cca Cca07g00264 Chr07 3364507 3368486 +
Dere Dere04g0082 Chr04 852366 855742 +
Enph Enph1g1048 Chr1 36677044 36679214 +
Glsi Glsi08g2047 Chr08 14345277 14348643 -
Gma Gma04g00226 Chr04 1942124 1945680 +
Gma Gma06g00208 Chr06 1836874 1840665 +
Gma Gma14g02136 Chr14 52519743 52522787 -
Gma Gma17g02465 Chr17 42680664 42683308 -
Gso Gso4g0210 Chr4 1909684 1913274 +
Gso Gso4g0210 Chr4 1909684 1913274 +
Gso Gso4g0210 Chr4 1909684 1913274 +
Gso Gso4g0210 Chr4 1909684 1913274 +
Lal Lal8g0533 Chr8 3646844 3652153 +
Lal Lal10g0886 Chr10 16358901 16362207 -
Lal Lal25g0528 Chr25 3788007 3791138 +
Lasa Lasa5g04530 Chr5 670622291 670624743 +
Lele Lele01g1186 Chr01 7073180 7076518 +
Lele Lele02g1454 Chr02 18769954 18773311 +
Lele Lele03g1201 Chr03 7046558 7050430 +
Lele Lele04g1436 Chr04 19637047 19640291 +
Lja Lja5g3325 Chr5 64441909 64445051 -
Mal Mal2g0477 Chr2 5500852 5503592 +
Mepo Mepo3g07846 Chr3 91555252 91558452 +
Mibi Mibi05g1404 Chr05 16683125 16686433 +
Mtr Mtr3g4272 Chr3 56565471 56568622 -
Phco Phco7g00282 Chr7 1981515 1984568 +
Prci Prci8g0753 Chr8 4800730 4804530 +
Pte Pte3g01421 Chr3 12465887 12484568 -
Pvu Pvu9g0177 Chr9 2952759 2956093 -
Spst Spst9g00282 Chr9 2675410 2678431 +
Ssu Ssu5g0059 Chr5 1121966 1124851 +
Sto Sto9g3704 Chr9 35356188 35359192 -
Tpr Tpr7g0228 Chr7 1897261 1901064 +
Trre Trre5g05686 Chr5 56907205 56910092 -
Tsu Tsu07g00259 Chr07 1995802 1999815 +
Vian Vian4g02394 Chr4 40622565 40625618 -
Vifa Vifa2g04504 Chr2 1325740056 1325742377 +
Vimu Vimu10g03490 Chr10 44583057 44586098 -
Viun Viun9g03679 Chr9 42045283 42048684 -
Vivi Vivi3g00596 Chr3 9937026 9940049 -
Vra Vra5g1656 Chr5 22945667 22948985 -
Vvi Vvi18g1239 Chr18 12341546 12342790 +
Vvi Vvi18g1240 Chr18 12343328 12350436 -
Sto Sto9g3705 Chr9 35360824 35364895 -
Vvi Vvi18g1241 Chr18 12363552 12370721 -
Vvi Vvi18g1242 Chr18 12377349 12377867 +
Adu Adu03g00630 Chr03 5776225 5779488 -
Arst Arst3g00807 Chr3 5782175 5785472 -
Bisa Bisa01g4116 Chr01 98844437 98852225 +
Bva Bva10g00926 Chr10 6957359 6958019 +
Car Car05g03432 Chr05 78821622 78826644 +
Dere Dere06g0098 Chr06 1091559 1095263 -
Glsi Glsi01g0093 Chr01 797040 800783 -
Lapu Lapu11g00856 Chr11 11214821 11218894 -
Lasa Lasa7g02269 Chr7 509889202 509891291 -
Mepo Mepo2g02465 Chr2 34421678 34425551 -
Mesa Mesa13g02557 Chr13 30145961 30149179 +
Phco Phco9g00400 Chr9 2821450 2824792 +
Psa Psa5g0075 Chr5 3555134 3558151 -
Pste Pste1g01387 Chr1 4408487 4413495 +
Pumo Pumo10g00786 Chr10 9827484 9828323 +
Pvu Pvu11g0354 Chr11 3001612 3005574 +
Rops Rops3g00437 Chr3 5411834 5415623 +
Spst Spst2g02649 Chr2 26089177 26093386 -
Sto Sto5g0131 Chr5 776228 776746 -
Trre Trre7g02618 Chr7 21631330 21634274 +
Vian Vian5g01584 Chr5 38384875 38388302 -
Vifa Vifa6g01041 Chr6 342238237 342241035 +
Vimu Vimu5g02481 Chr5 35244922 35248388 -
Viun Viun11g02568 Chr11 38849770 38853715 -
Vivi Vivi5g02960 Chr5 117812076 117815346 -
Vvi Vvi18g1243 Chr18 12384203 12402206 +
Adu Adu08g00162 Chr08 2496523 2501047 +
Aed Aed9g0219 Chr9 1557763 1562923 -
Aev Aev08g0195 Chr08 1087837 1091706 -
Aev Aev07g0683 Chr07 4346032 4350633 -
Ahy Ahy17g2258 Chr17 109428079 109432836 -
Ahy Ahy16g0055 Chr16 503770 508607 -
Aip Aip07g02412 Chr07 101590959 101595554 -
Aip Aip06g00047 Chr06 399434 404167 -
Amo Amo17g2121 Chr17 110070844 110075523 -
Apr Apr9g0637 Chr9 10370791 10375795 +
Apr Apr5g1660 Chr5 20202879 20207465 +
Arst Arst8g00190 Chr8 2508741 2513277 +
Bach Bach12g00085 Chr12 626341 631237 -
Bva Bva06g01901 Chr06 12963011 12968624 -
Bva Bva10g00927 Chr10 6960584 6966287 +
Car Car04g03591 Chr04 65131138 65141270 +
Car Car05g03273 Chr05 77465950 77470107 +
Cca Cca05g00075 Chr05 1609188 1614732 +
Cca Cca07g00263 Chr07 3337910 3342212 -
Dod Dod08g2282 Chr08 50839436 50844802 +
Dod Dod08g2282 Chr08 50839436 50844802 +
Gma Gma04g00225 Chr04 1928159 1932420 -
Gma Gma06g00207 Chr06 1830141 1835166 -
Gma Gma14g02138 Chr14 52538706 52543465 +
Gma Gma17g02466 Chr17 42691507 42696718 +
Gso Gso4g0209 Chr4 1895951 1900949 -
Gso Gso4g0209 Chr4 1895951 1900949 -
Gso Gso4g0209 Chr4 1895951 1900949 -
Gso Gso4g0209 Chr4 1895951 1900949 -
Lal Lal4g0064 Chr4 377904 382732 -
Lal Lal8g0532 Chr8 3634129 3640056 -
Lan Lan14g0954 Chr14 15916382 15921197 +
Lan Lan14g0954 Chr14 15916382 15921197 +
Lapu Lapu9g02297 Chr9 37585242 37590836 +
Lasa Lasa5g04705 Chr5 689877609 689878367 -
Lja Lja1g3496 Chr1 43569856 43575482 -
Lja Lja5g3326 Chr5 64691516 64696309 +
Mal Mal1g6077 Chr1 139306608 139311190 +
Mal Mal2g0476 Chr2 5483189 5488433 -
Mepo Mepo3g07989 Chr3 92721404 92726695 +
Mtr Mtr1g0720 Chr1 8153675 8159539 +
Mtr Mtr3g4273 Chr3 56586764 56592765 +
Phac Phac9g00072 Chr9 572626 577791 -
Phco Phco7g00281 Chr7 1964142 1968416 -
Psa Psa5g0301 Chr5 21880406 21886485 -
Pte Pte1g02683 Chr1 46950807 46955085 -
Pvu Pvu9g0179 Chr9 2994099 2998975 +
Rops Rops10g02472 Chr10 43200787 43206084 +
Seca Seca4g00415 Chr4 6826937 6833023 -
Spst Spst9g00279 Chr9 2660347 2664678 -
Tpr Tpr1g3880 Chr1 42923688 42928822 +
Tpr Tpr7g0226 Chr7 1866892 1872897 -
Trre Trre5g05885 Chr5 58470166 58474607 +
Tsu Tsu01g00193 Chr01 1498275 1503480 -
Tsu Tsu07g00257 Chr07 1984910 1989495 -
Vian Vian4g02396 Chr4 40640478 40644601 +
Vifa Vifa2g04505 Chr2 1325807665 1325812186 +
Vimu Vimu10g03493 Chr10 44599556 44602853 +
Viun Viun9g03681 Chr9 42056105 42060874 +
Vivi Vivi3g00935 Chr3 15386386 15390222 +
Vra Vra5g1657 Chr5 22960003 22964598 +
Vvi Vvi18g1244 Chr18 12403268 12404134 +
Vvi Vvi18g1245 Chr18 12409163 12410029 +