Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4272 ATGAGAGAGATCTTGCACGTTCAAGGTGGCCAATGCGGTAACCAAATTGGATCCAAATTCTGGGAGGTGATATGCGACGAACACGGCATTGATCCAACTGGTAAATATGTAAGCGAAGGTGGAAATGATACTCAATTGGAAAGGATCAATGTGTATTACAATGAAGCTTCTGGTGGAAGGTATGTTCCTAGAGCAGTTCTTATGGATCTTGAACCTGGTACTATGGAAAGTATCAGATCTGGTCCGTTCGGTAAGATCTTTCGTCCTGATAATTTCGTGTTTGGACAATCTGGTGCTGGTAATAATTGGGCCAAAGGTCATTATACCGAAGGTGCTGAGTTGATTGACTCTGTTCTTGATGTTGTTCGTAAAGAAGCAGAGAATTGTGATTGCTTGCAAGGTTTTCAAGTTTGCCACTCCCTTGGAGGAGGCACGGGTTCTGGCATGGGAACACTATTGATATCAAAGATTAGGGAGGAATATCCAGACAGAATGATGCTTACTTTCTCTGTTTTCCCATCTCCAAAGGTATCTGACACAGTTGTTGAGCCATACAATGCCACATTATCTGTCCACCAACTGGTAGAAAATGCAGATGAGTGTATGGTTCTTGACAATGAAGCACTTTATGACATTTGCTTCAGGACATTAAAACTCAGCACCCCTAGCTTTGGGGATCTGAACCATCTGATTTCCGCAACTATGAGTGGGGTTACCTGTTGTCTGAGGTTTCCTGGACAATTGAACTCTGATCTCAGGAAGCTGGCTGTCAATCTGATCCCATTCCCACGTCTTCACTTTTTTATGGTTGGGTTTGCACCTCTCACTTCTCGTGGGTCTCAGCAGTATGTATCCCTTACTGTCCCGGAACTGACTCAACAAATGTGGGACGCCAAGAATATGATGTGTGCTGCTGACCCTCGACATGGTCGATACTTAACTGCATCTGCAATGTTCAGAGGAAAGATGAGCACCAAAGAGGTTGATGAACAAATCATCAATGTGCAGAACAAGAATTCTTCATACTTTGTTGAATGGATTCCCAACAATGTGAAGTCTAGTGTGTGTGATATCCCACCCAAGAATTTGAAGATGTCGTCCACTTTTATTGGGAACTCTACTTCAATTCAGGAGATGTTCAGGAGGGTCAGTGAGCAGTTTACTGCAATGTTCCGGCGCAAGGCCTTTTTGCATTGGTATACTGGGGAGGGAATGGATGAGATGGAGTTCACGGAGGCAGAAAGTAACATGAACGATTTGGTAGCAGAGTACCAACAATACCAGGATGCAATAGCTGAGGAGGAAGATGATTATGAAGAAGAAGAAGGTGAGGAACATTTTGTGGAGCAGTAG 1353 0.4375 MREILHVQGGQCGNQIGSKFWEVICDEHGIDPTGKYVSEGGNDTQLERINVYYNEASGGRYVPRAVLMDLEPGTMESIRSGPFGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAIAEEEDDYEEEEGEEHFVEQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4272 450 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 154 166 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 214 226 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 232 241 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 247 260 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 267 283 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 313 331 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 331 345 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 349 372 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 379 390 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Beta-tubulin signature 414 432 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 Gene3D Helix hairpin bin 376 431 IPR023123 -
Mtr3g4272 450 Gene3D - 265 375 IPR037103 -
Mtr3g4272 450 PANTHER TUBULIN 1 442 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 SUPERFAMILY Tubulin C-terminal domain-like 246 430 IPR008280 -
Mtr3g4272 450 Coils Coil 410 450 - -
Mtr3g4272 450 CDD beta_tubulin 2 428 - -
Mtr3g4272 450 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Mtr3g4272 450 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 245 IPR036525 -
Mtr3g4272 450 Pfam Tubulin C-terminal domain 263 384 IPR018316 -
Mtr3g4272 450 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 442 - -
Mtr3g4272 450 Gene3D Tubulin/FtsZ, GTPase domain 1 264 IPR036525 -
Mtr3g4272 450 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 PRINTS Tubulin signature 372 400 IPR000217 GO:0005874|GO:0007017
Mtr3g4272 450 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Mtr3g4272 450 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Mtr3g4272 450 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Mtr3g4272 450 SMART Tubulin_C_4 248 385 IPR018316 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4272 Mtr-Chr3 56565471 56568622 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4272 K07375 - gmx:100781525 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4272 3 56565471 56568622 Mtr3g4272 3 56565471 56568622 ECH