Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00370 ATGAGGGAAATATTGCACGTCCAAGGAGGACAATGCGGTAACCAAATCGGTTCCAAGTTCTGGGAAGTCATATGCGACGAGCACGGCATCGACCCCACCGGGACGTTCGTGGGCGACGCCGCATCCGATCTCCAACTCGAGAGGATCAACGTCTACTACAATGAGGCCTCCGGCGGAAGGTACGTTCCACGGGCCGTCCTCATGGATCTCGAGCCCGGCACCATGGACAGCATCAGATCCGGCCCATACGGCAAGATCTTCAGGCCCGATAACTTCGTCTTCggccagtccggcgctggaaacaattgggccaaaggccactacaccgaaggcgccgagttaatcgattccgttctcgacgtcgttcgcaaagaggccgaaaactgtgactgcttgcaaggttttcaagtgtgtcactctcttggaggtggcacgggttctggtatgggaacactcttgatatcgaagatcagggaggagtacccggacaggatgatgctcactttctctgtttttccttctccaaaggtctctgacacggttgtggagccctacaatgctactttatcagtgcaccaactagtagagaatgcagatgagtgcatggttcttgacaacgaagcactctatgacatttgcttcagaaccttaaaactcaccactcctagttttggtgatctgaaccacctgatatctgcaaccatgagtggtgtgacatgttgcttgaggcgcaaggccttcttgcactggtacactggtgaaggaatggacgagatggagttcactgaggcagagagcaacatgaacgatttggtggcagagtaccagcaatatcaggacgcaacggctgaagaggatgagtacgatgagggggaggacgaggagcATGTTTACGAGGAGCAGTAG 906 0.1887 MREILHVQGGQCGNQIGSKFWEVICDEHGIDPTGTFVGDAASDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEEDEYDEGEDEEHVYEEQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00370 301 CDD beta_tubulin 2 279 - -
Cca05g00370 301 PANTHER TUBULIN 1 243 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 MobiDBLite consensus disorder prediction 279 301 - -
Cca05g00370 301 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cca05g00370 301 PANTHER TUBULIN BETA-1 CHAIN-RELATED 243 294 - -
Cca05g00370 301 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Cca05g00370 301 Gene3D Tubulin/FtsZ, GTPase domain 1 261 IPR036525 -
Cca05g00370 301 PANTHER TUBULIN 243 294 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 243 - -
Cca05g00370 301 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Cca05g00370 301 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cca05g00370 301 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Cca05g00370 301 Coils Coil 261 281 - -
Cca05g00370 301 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Beta-tubulin signature 154 166 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Beta-tubulin signature 214 226 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca05g00370 301 PRINTS Beta-tubulin signature 232 241 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca05g00370 301 SUPERFAMILY Tubulin C-terminal domain-like 233 279 IPR008280 -
Cca05g00370 301 MobiDBLite consensus disorder prediction 280 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00370 Cca-Chr5 8138306 8140887 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00370 K07375 - gmx:100819408 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00370 05 8138306 8140887 Cca05g00370 05 8138306 8140887 ECH