Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0220 ATGAGAGAGATCTTGCACATCCAGGGAGGCCAATGCGGTAACCAAATCGGTTCCAAGTTCTGGGAGGTGATCTGCGACGAGCACGGCATCGATCCCACCGGAAAGTACGACGACCTCGGCAACTCCGGCATCCAACTTGAGAGGATCAATGTCTATTACAATGAGGCCTCTGGCGGAAGGTACGTTCCCAGGGCGGTGCTTATGGATCTCGAGCCTGGAACCATGGACAGCATCAGATCTGGCCCCTACGGCAAGATCTTCCGACCTGACAACTTCGTCTTCGGCCAGTCCGGCGCTGGTAACAACTGGGCCAAAGGTCATTACACCGAAGGCGCCGAGCTGATCGACTCTGTTCTCGATGTCGTTCGCAAAGAGGCTGAAAACTGCGATTGTTTGCAAGGTATATTAATGCACATTGTTCAATACTTTCATTGTCTTTCTATTTTCCAATGCCGCAATGCTTCAGAGACGAAGCATATTCAGATCTGTTTTCAAGTTTGCCACTCTCTTGGAGGAGGCACAGGTTCTGGCATGGGAACATTGTTGATATCAAAAATTAGGGAGGAATACCCAGACAGAATGATGCTTACTTTCTCTGTTTTCCCATCTCCAAAGGTTTCTGACACTGTTGTGGAGCCATACAATGCCACTTTATCTGTACACCAACTGGTTGAAAATGCAGATGAGTGCATGGTTCTTGACAATGAAGCACTTTATGACATATGCTTTAGGACATTGAAACTCAGCACCCCTAGCTTTGGTGATCTCAACCATCTGATATCTGCAACCATGAGTGGGGTTACCTGTTGTCTGAGGTTTCCTGGACAACTGAACTCTGACCTTAGGAAGTTGGCTGTCAATCTGATTCCATTTCCCCGTCTTCACTTCTTTATGGTGGGATTTGCACCTCTCACTTCTCGTGGGTCTCAGCAGTATGTCTCCCTTACTGTCCCAGAGCTGACTCAGCAAATGTGGGATGCCAAAAATATGATGTGTGCTGCTGATCCCCGACATGGCCGATACTTGACTGCATCTGCTATGTTCAGAGGAAAGATGAGCACCAAAGAGGTTGATGAACAGATGATCAATGTGCAGAACAAGAACTCTTCATACTTTGTTGAATGGATTCCCAACAATGTGAAGTCCAGTGTGTGTGATATTCCACCCAGGAACTTGAAGATGTCATCCACTTTTATTGGGAACTCAACATCAATTCAAGAGATGTTTAGGAGGGTCAGTGAGCAGTTCACTGCGATGTACCGGCGCAAAGCCTTCTTGCATTGGTACACTGGGGAGGGTATGGACGAGATGGAGTTCACCGAGGCAGAGAGTAATATGAATGATTTGGTAGCAGAGTACCAGCAGTACCAGGACGCGACTGCAGAGGAGGATGAATACGAAGATGAAGCTGAGGAGGCGTATGATGATCAGTAG 1434 0.4756 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGKYDDLGNSGIQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGILMHIVQYFHCLSIFQCRNASETKHIQICFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEEDEYEDEAEEAYDDQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0220 477 MobiDBLite consensus disorder prediction 457 477 - -
Aed9g0220 477 PANTHER TUBULIN 1 135 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 PANTHER TUBULIN 153 472 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 135 - -
Aed9g0220 477 SMART Tubulin_4 49 275 IPR003008 GO:0005525
Aed9g0220 477 MobiDBLite consensus disorder prediction 458 477 - -
Aed9g0220 477 CDD beta_tubulin 2 457 - -
Aed9g0220 477 Gene3D Tubulin/FtsZ, GTPase domain 1 293 IPR036525 -
Aed9g0220 477 PRINTS Tubulin signature 163 181 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Tubulin signature 182 203 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Tubulin signature 401 429 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Tubulin signature 207 220 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Tubulin signature 221 241 IPR000217 GO:0005874|GO:0007017
Aed9g0220 477 SMART Tubulin_C_4 277 414 IPR018316 -
Aed9g0220 477 Gene3D Helix hairpin bin 405 461 IPR023123 -
Aed9g0220 477 PRINTS Beta-tubulin signature 342 360 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Beta-tubulin signature 360 374 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Beta-tubulin signature 408 419 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Beta-tubulin signature 378 401 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g0220 477 PRINTS Beta-tubulin signature 443 461 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed9g0220 477 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 275 IPR036525 -
Aed9g0220 477 Gene3D - 294 404 IPR037103 -
Aed9g0220 477 Pfam Tubulin C-terminal domain 292 413 IPR018316 -
Aed9g0220 477 PANTHER TUBULIN BETA-1 CHAIN-RELATED 153 472 - -
Aed9g0220 477 Pfam Tubulin/FtsZ family, GTPase domain 3 137 IPR003008 GO:0005525
Aed9g0220 477 Pfam Tubulin/FtsZ family, GTPase domain 163 242 IPR003008 GO:0005525
Aed9g0220 477 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 171 177 IPR017975 GO:0005525|GO:0005874|GO:0007017
Aed9g0220 477 Coils Coil 439 476 - -
Aed9g0220 477 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Aed9g0220 477 SUPERFAMILY Tubulin C-terminal domain-like 275 460 IPR008280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0220 Aed-Chr9 1573658 1577323 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0220 K07375 - gmx:100819883 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0220 9 1573658 1577323 Aed9g0220 9 1573658 1577323 ECH