Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05885 ATGTGTGACCTTATGTCTGCACCTGCACCTATCAAAATTGGTCATGAAATGGAACATTCTGAGGATGAAAAGAAGAAAAGGGTCGGGTCTATAAAGAAGGTGGCAAAGAGTGCCTCAAGCAAGTTCAAGCATTCCTTCGCTAAGAAGGGGAGGAGGCACAGCAGGGTTGTGTCTATCGCTATTCAAGATGATTTTGATGCTGAAGAGTTGCTGGCAGTTGACGCTTTTCGCCAAACCCTTATCTTGGAAGAGCTATTACCTGCAAAACATGATGATCCTCATATGATGCTAAGATTTTTAAGGGCAAGAAAGTATGACATAGAGAAAACAAAGCAAATGTGGTCAGATATGCTCAAGTGGAGGAGTGAATTTGGTGCTGACACTATAATGGAGGATTTTGAATTCGAGGAAAAAGATGAAGTTCTAAAATACTATCCACAAGGGCATCATGGAGTTGATAAGGATGGTAGACCTGTTTACATTGAAAGGTTGGGTCAGCATATTGACCAAAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTTAAAAGTATGAACAAAGCTGCAAGGGATCTCCTCCAGAAGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCCCTCAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTATTGTGGAACACTGTTAAGTCATTCCTAGATCCCAAGACCACCTCCAAAATCCATGTCCTAGGTAACAAGTACCAAAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGATTTCTTGGGTGGTACGTGTACTTGTGCAGATAAAGGTGGATGCATGCTATCTGACAAGGGTCCATGGAATGATCCAGAGATCTTGAAGATGGCTCAAAATGGTGTTGGGAAATGCTCAAGAATGCCATTATCCGCACAGATTGAGGAGAAAACAATCCAACAAGTTGAAACTGTATATCAGAAGGGATTCAAAGATCCATTTCCAGAGTCATTCGATGTTCATTGCTTACCCCATGATGAACCCAAATCCTATGCTGTTGCAAAGAAATGTAATGTTTATCAGTATGATTCCTATGATGTTCCAGTACTTGACAAAACAGTTGATTCATCATGGAAGAAAACAATACAACATGACAAATATACACTTTCTAAAGAGTGTTTCCCCAACAATGATGGAAAGATTTCTGGTGGGATTAGCAAACAATTTGTTGGTGGAATAATGGCCCTTATTATGGGAGTAGTGACCATTATTCGCATGACAAGTAGCGTGCCAAGGAAAATCACAGAAGCAGCACTTTATGGTGGAAATTCAGTGTATTATGATGGGCCCATGATGAAAGCACCTGCAGCTGCTGCAGTTTCAAACAATGAGTATATGGCCATGATGAAGCGCATGGCTGAACTTGAAGAGAAAGTTACTGTCCTCAGTGTTAGGCCTATCATGCCTCCAGAAAAAGAGGAAATGCTTAATAATGCTCTCTCTAGGGTCAGTACCCTTGAACAAGAGTTGGGTGCGACCAAAAAGGCACTAGATGATGCCCTTGCTCGCCAAATAGGACTCCAAGCTCAGATTGACAAGAAGAAAAAGAAGAAGTTGTTCCGCTTGCACTGGTAA 1617 0.4174 MCDLMSAPAPIKIGHEMEHSEDEKKKRVGSIKKVAKSASSKFKHSFAKKGRRHSRVVSIAIQDDFDAEELLAVDAFRQTLILEELLPAKHDDPHMMLRFLRARKYDIEKTKQMWSDMLKWRSEFGADTIMEDFEFEEKDEVLKYYPQGHHGVDKDGRPVYIERLGQHIDQSTTILDVQGVGLKSMNKAARDLLQKLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPDFLGGTCTCADKGGCMLSDKGPWNDPEILKMAQNGVGKCSRMPLSAQIEEKTIQQVETVYQKGFKDPFPESFDVHCLPHDEPKSYAVAKKCNVYQYDSYDVPVLDKTVDSSWKKTIQHDKYTLSKECFPNNDGKISGGISKQFVGGIMALIMGVVTIIRMTSSVPRKITEAALYGGNSVYYDGPMMKAPAAAAVSNNEYMAMMKRMAELEEKVTVLSVRPIMPPEKEEMLNNALSRVSTLEQELGATKKALDDALARQIGLQAQIDKKKKKKLFRLHW 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05885 538 Coils Coil 490 517 - -
Trre5g05885 538 SMART CRAL_TRIO_N_2 92 117 IPR011074 -
Trre5g05885 538 CDD SEC14 142 266 IPR001251 -
Trre5g05885 538 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 69 271 IPR001251 -
Trre5g05885 538 SUPERFAMILY CRAL/TRIO N-terminal domain 63 133 IPR036273 -
Trre5g05885 538 Gene3D - 125 296 IPR036865 -
Trre5g05885 538 SMART sec14_4 137 268 IPR001251 -
Trre5g05885 538 Pfam CRAL/TRIO, N-terminal domain 89 116 IPR011074 -
Trre5g05885 538 SUPERFAMILY CRAL/TRIO domain 136 293 IPR036865 -
Trre5g05885 538 Coils Coil 452 472 - -
Trre5g05885 538 Gene3D - 57 124 - -
Trre5g05885 538 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 166 529 - -
Trre5g05885 538 Pfam CRAL/TRIO domain 167 265 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05885 Trre-Chr5 58470166 58474607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05885 72 262 Acyl Lipid Metabolism Gene Families AT5G47730 25.424 3.91e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05885 K26544 - gmx:100802579 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05885 5 58470166 58474607 Trre5g05885 5 58470166 58474607 ECH