Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1238 ATGAGGGAGATCTTGCACGTTCAGGGAGGCCAATGCGGTAACCAAATTGGATCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGTGTGGATCCCACTGGGAGGTACAACGGAGATGGTTCATCTGATCTTCAGTTGGAGAGGATCAATGTCTACTACAATGAGGCTTCTGGTGGAAGGTACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCTGGGACTATGGACAGTATCAGATCGGGACCGTATGGGCAGATCTTTCGCCCTGATAATTTCGTTTTTGGTCAGTCCGGTGCCGGCAACAATTGGGCCAAGGGTCATTATACTGAGGGGGCGGAGTTGATTGATGCGGTTCTCGATGTTGTTCGCAAGGAGGCTGAGAATTGTGATTGCATGCAAGGTTTTCAAGTGTGCCATTCACTTGGAGGAGGCACTGGTTCTGGCATGGGGACCCTCCTGATATCAAAGATGAGAGAGGAATACCCAGATAGAATGATGCTCACTTTCTCCGTCTTCCCATCTCCAAAGGTCTCTGACACAGTTGTGGAGCCATATAATGCCACCCTCTCAGTGCACCAGTTGGTAGAGAATGCTGACGAATGCATGGTTCTGGACAATGAGGCTCTTTATGATATTTGTTTCAGGACTCTCAAGCTCAGCACTCCTAGCTTTGGTGACCTGAACCACTTGATCTCTGCGACTATGAGTGGGGTGACTTGCTGCCTGAGGTTCCCTGGCCAGCTGAACTCAGACCTCCGCAAGCTGGCTGTGAATCTGATCCCGTTCCCTCGCCTTCATTTCTTTATGGTGGGTTTTGCACCACTCACCTCTCGTGGATCCCAGCAGTACATCTCCCTCACAGTGCCAGAGCTAACTCAGCAAATGTGGGATGCCAAGAACATGATGTGTGCGGCTGACCCTCGGCATGGCCGCTACCTGACTGCCTCGGCCATGTTCAGGGGAAAGATGAGCACCAAGGAGGTGGACGAACAGATGATCAATGTGCAAAACAAAAACTCGTCATATTTTGTGGAGTGGATTCCTAATAACGTGAAATCCAGTGTGTGCGATATTCCACCAAGAGGTCTGAAGATGGCATCTACATTTGTGGGGAACTCCACTTCAATCCAGGAGATGTTCAGGAGGGTGAGCGAGCAGTTCACAGCCATGTTCAGGCGCAAGGCTTTCTTGCACTGGTATACTGGGGAAGGAATGGATGAGATGGAATTCACGGAAGCAGAGAGCAACATGAATGATTTGGTGTCAGAATACCAGCAATACCAGGATGCAACTGCTGATGACGAGGGTGAGTATGAGGAGGGCCCAGAAGAGAATTATGAGGCCTAA 1347 0.5041 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDGSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCMQGFQVCHSLGGGTGSGMGTLLISKMREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEEGPEENYEA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1238 448 MobiDBLite consensus disorder prediction 430 448 - -
Vvi18g1238 448 FunFam Tubulin beta chain 376 437 - -
Vvi18g1238 448 PRINTS Beta-tubulin signature 247 260 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 313 331 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 331 345 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 232 241 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 414 432 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 379 390 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 267 283 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 349 372 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 154 166 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Beta-tubulin signature 214 226 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1238 448 MobiDBLite consensus disorder prediction 424 448 - -
Vvi18g1238 448 Gene3D Helix hairpin bin 376 446 IPR023123 -
Vvi18g1238 448 PANTHER TUBULIN 3 429 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 Gene3D - 265 375 IPR037103 -
Vvi18g1238 448 FunFam Tubulin beta chain 266 375 - -
Vvi18g1238 448 SUPERFAMILY Tubulin C-terminal domain-like 246 431 IPR008280 -
Vvi18g1238 448 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Vvi18g1238 448 Pfam Tubulin C-terminal domain 263 384 IPR018316 -
Vvi18g1238 448 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 245 IPR036525 -
Vvi18g1238 448 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vvi18g1238 448 Coils Coil 410 430 - -
Vvi18g1238 448 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 372 400 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Vvi18g1238 448 Gene3D Tubulin/FtsZ, GTPase domain 1 264 IPR036525 -
Vvi18g1238 448 FunFam Tubulin beta chain 1 264 - -
Vvi18g1238 448 CDD beta_tubulin 2 428 - -
Vvi18g1238 448 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Vvi18g1238 448 SMART Tubulin_C_4 248 385 IPR018316 -
Vvi18g1238 448 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1238 Vvi-Chr18 12337361 12340909 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1238 K07375 - vvi:100259087 886.33