Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03490 TTGGTTCCCTTTCCCTCCCATCGTCAAACAAAACTCCAAACCCTAAATTTCTCTCTTCCTCCCTTCGTCGGAACCATGAGAGAGATCTTGCACGTTCAGGGAGGCCAATGCGGCAACCAAATCGGTTCCAAATTCTGGGAGGTAATCTGCGACGAGCACGGAATAGATCCAACTGGAAAGTACAACGGTCTTGGAAACTCTGACATCCAACTCGAGAGGATCAATGTCTATTACAATGAGGCCTCTGGCGGGAGGTACGTTCCCAGAGCCGTGCTTATGGATCTTGAACCTGGAACCATGGACAGCATCAGATCTGGCCCCTACGGCAAGATCTTCCGTCCCGATAACTTTGTCTTCGGACAGTCCGGTGCCGGTAACAATTGGGCGAAAGGTCATTATACCGAAGGCGCTGAATTGATAGACTCCGTTCTCGATGTTGTTCGTAAAGAGGCTGAGAACTGTGATTGCTTGCAAGGTTTTCAAGTGTGCCACTCTCTTGGAGGAGGCACGGGTTCCGGCATGGGAACATTGTTGATATCAAAGATTAGGGAGGAATACCCAGACCGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCCAAGGTTTCTGACACAGTTGTGGAGCCGTACAATGCCACTTTATCTGTACACCAACTGGTTGAAAATGCAGACGAGTGCATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTTAGGACATTGAAACTCAGCACACCTAGCTTTGGCGATCTCAACCATCTTATTTCTGCAACCATGAGTGGGGTTACATGTTGTCTGAGGTTTCCTGGACAACTGAACTCTGACCTCAGGAAGCTGGCTGTCAATCTGATTCCATTTCCCCGTCTTCACTTCTTTATGGTGGGATTTGCACCTCTCACTTCTCGTGGGTCTCAGCAGTATGTCTCCCTTACAGTCCCAGAGCTGACTCAGCAGATGTGGGATGCCAAAAATATGATGTGTGCTGCTGATCCTAGGCATGGCCGATACTTGACTGCATCTGCTATGTTCAGGGGAAAGATGAGCACCAAAGAGGTTGATGAACAGATGATTAATGTTCAGAACAAGAACTCATCGTACTTTGTTGAATGGATTCCCAACAATGTGAAGTCGAGTGTGTGTGATATTCCTCCCAAGAATTTAAAGATGTCATCTACTTTTATTGGGAACTCAACATCAATTCAGGAGATGTTTAGGAGGGTGAGTGAGCAGTTCACTGCTATGTACAGGCGCAAGGCCTTTTTGCACTGGTACACTGGGGAAGGAATGGACGAGATGGAGTTCACAGAGGCAGAGAGCAATATGAATGATTTGGTGGCAGAGTACCAGCAGTACCAAGATGCAACTGCAGATGAGGAAGAAGATTTTGAGGAAGAACCTGAGGAAGACCACTATGCTGACCAGTAG 1428 0.4706 MVPFPSHRQTKLQTLNFSLPPFVGTMREILHVQGGQCGNQIGSKFWEVICDEHGIDPTGKYNGLGNSDIQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDFEEEPEEDHYADQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03490 475 Gene3D - 290 400 IPR037103 -
Vimu10g03490 475 Pfam Tubulin C-terminal domain 288 409 IPR018316 -
Vimu10g03490 475 FunFam Tubulin beta chain 401 462 - -
Vimu10g03490 475 Gene3D Helix hairpin bin 401 472 IPR023123 -
Vimu10g03490 475 FunFam Tubulin beta chain 26 289 - -
Vimu10g03490 475 Pfam Tubulin/FtsZ family, GTPase domain 28 238 IPR003008 GO:0005525
Vimu10g03490 475 SUPERFAMILY Tubulin C-terminal domain-like 271 456 IPR008280 -
Vimu10g03490 475 PRINTS Beta-tubulin signature 115 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 135 153 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 257 266 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 439 457 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 292 308 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 338 356 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 404 415 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 374 397 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 239 251 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 272 285 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 356 370 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 68 85 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Beta-tubulin signature 179 191 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu10g03490 475 FunFam Tubulin beta chain 291 400 - -
Vimu10g03490 475 CDD beta_tubulin 27 453 - -
Vimu10g03490 475 PRINTS Tubulin signature 217 237 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 159 177 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 203 216 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 120 131 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 178 199 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 78 97 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 397 425 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 35 55 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 PRINTS Tubulin signature 133 157 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 SUPERFAMILY Tubulin nucleotide-binding domain-like 26 270 IPR036525 -
Vimu10g03490 475 PANTHER TUBULIN 28 454 IPR000217 GO:0005874|GO:0007017
Vimu10g03490 475 SMART Tubulin_C_4 273 410 IPR018316 -
Vimu10g03490 475 SMART Tubulin_4 74 271 IPR003008 GO:0005525
Vimu10g03490 475 MobiDBLite consensus disorder prediction 454 475 - -
Vimu10g03490 475 MobiDBLite consensus disorder prediction 451 475 - -
Vimu10g03490 475 Gene3D Tubulin/FtsZ, GTPase domain 26 289 IPR036525 -
Vimu10g03490 475 Coils Coil 435 462 - -
Vimu10g03490 475 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 167 173 IPR017975 GO:0005525|GO:0005874|GO:0007017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03490 Vimu-Chr10 44583057 44586098 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03490 K07375 - gmx:100819883 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03490 10 44583057 44586098 Vimu10g03490 10 44583057 44586098 ECH