Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0043 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01552 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0045 . . . . . . . . . . . . . . . . . . Apr1g0331 . . . . . . . Bva06g01551 Bva05g00206 . Car05g02612 Cca03g00289 . . . . . . . . . Gma06g01476 Gma04g01930 . . Gso6g1401 Gso6g1401 . . . . . . Lal4g0693 Lal21g0702 . . . . . . . . . . . . . . . . . . Lja1g4355 . . Mal2g1363 . . . . . . . Mtr3g3479 . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g2424 . . . . Tpr3g3289 . . . Tsu07g01167 . . . . . . . . . . . .
Vvi17g0046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0047 . . . . . . Aed10g0776 . Aev08g2440 . Ahy18g2922 . Aip08g03320 . . . . . Apr1g0330 . . . . . . . Bva06g01548 . . Car05g02613 Cca03g00290 . . . Dod09g0103 . . . . . Gma06g01477 Gma04g01929 . . Gso6g1402 Gso6g1402 . . . . . . Lal4g0694 . . . . . . . . . . . . . . . . . . . Lja1g4353 . . Mal2g1361 . . . . . . . Mtr3g3480 . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g2423 . . . . Tpr3g3290 . . . Tsu07g01166 . . . . . . . . . . . .
Vvi17g0048 . . . . . . Aed10g0777 . . . . . . . . . . . . . . . . . . . . . . Car05g02619 Cca03g00292 . . . . . . . . . Gma06g01480 . . . Gso6g1404 . . . . . . . Lal4g0695 Lal21g0704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g2418 . Sto4g0197 . . . . . . . . . . . . . . . . . . .
Vvi17g0049 . . . . . . . Aed5g2226 Aev08g2439 . Ahy18g2923 . Aip08g03321 . . . . . Apr1g0329 Apr2g1142 . . . . . . Bva06g01547 Bva05g00209 . Car06g00579 . Cca09g02372 . . Dod09g0104 . . . . . . Gma08g00088 Gma05g01983 . . . . . . . . Lal17g0824 . . . . . . . . . . . . . . . . . . . . Lja1g4351 Lja4g0478 Mal7g4860 Mal2g1360 . . . . . . Mtr8g3396 Mtr3g3481 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g0196 . Tpr3g0708 Tpr3g3291 . . Tsu02g00531 Tsu07g01165 . . . . . . . . . . . Vra7g3443
Vvi17g0050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g0043 Chr17 338381 343360 -
Bva Bva06g01552 Chr06 11115290 11116688 +
Vvi Vvi17g0044 Chr17 345307 353328 -
Vvi Vvi17g0045 Chr17 359709 361734 +
Apr Apr1g0331 Chr1 3981855 3984051 -
Bva Bva06g01551 Chr06 11108145 11110315 -
Bva Bva05g00206 Chr05 1030275 1032334 +
Car Car05g02612 Chr05 71203405 71205645 +
Cca Cca03g00289 Chr03 4367593 4372468 +
Gma Gma06g01476 Chr06 14186092 14188164 +
Gma Gma04g01930 Chr04 49664808 49667394 -
Gso Gso6g1401 Chr6 13907518 13909772 +
Gso Gso6g1401 Chr6 13907518 13909772 +
Lal Lal4g0693 Chr4 5524341 5526023 +
Lal Lal21g0702 Chr21 5610349 5614308 +
Lja Lja1g4355 Chr1 56197267 56199260 -
Mal Mal2g1363 Chr2 16354412 16356079 -
Mtr Mtr3g3479 Chr3 48676142 48678373 +
Ssu Ssu1g2424 Chr1 67543396 67545060 -
Tpr Tpr3g3289 Chr3 36234103 36236257 +
Tsu Tsu07g01167 Chr07 9962565 9964749 -
Vvi Vvi17g0046 Chr17 364832 366466 -
Vvi Vvi17g0047 Chr17 370947 376176 -
Aed Aed10g0776 Chr10 6422279 6433340 -
Aev Aev08g2440 Chr08 23306085 23309679 +
Ahy Ahy18g2922 Chr18 134160699 134165193 -
Aip Aip08g03320 Chr08 124398739 124402026 -
Apr Apr1g0330 Chr1 3967447 3973049 +
Bva Bva06g01548 Chr06 11096282 11099909 +
Car Car05g02613 Chr05 71208800 71211669 -
Cca Cca03g00290 Chr03 4377740 4384049 -
Dod Dod09g0103 Chr09 1421946 1426301 -
Gma Gma06g01477 Chr06 14193159 14198003 -
Gma Gma04g01929 Chr04 49646298 49652181 +
Gso Gso6g1402 Chr6 13914589 13920709 -
Gso Gso6g1402 Chr6 13914589 13920709 -
Lal Lal4g0694 Chr4 5530793 5536187 -
Lja Lja1g4353 Chr1 56176538 56185998 +
Mal Mal2g1361 Chr2 16319126 16321770 +
Mtr Mtr3g3480 Chr3 48682877 48686366 -
Ssu Ssu1g2423 Chr1 67507095 67511013 +
Tpr Tpr3g3290 Chr3 36239933 36244445 -
Tsu Tsu07g01166 Chr07 9954765 9958750 +
Vvi Vvi17g0048 Chr17 394402 397526 +
Aed Aed10g0777 Chr10 6436766 6440151 -
Car Car05g02619 Chr05 71243805 71247179 -
Cca Cca03g00292 Chr03 4401133 4412164 -
Gma Gma06g01480 Chr06 14215252 14218642 -
Gso Gso6g1404 Chr6 13936170 13939480 -
Lal Lal4g0695 Chr4 5543702 5548205 -
Lal Lal21g0704 Chr21 5626088 5630618 -
Ssu Ssu1g2418 Chr1 67459910 67462402 +
Sto Sto4g0197 Chr4 1478888 1481032 -
Vvi Vvi17g0049 Chr17 407132 413202 +
Aed Aed5g2226 Chr5 24280029 24284118 -
Aev Aev08g2439 Chr08 23299290 23303009 +
Ahy Ahy18g2923 Chr18 134168755 134173145 -
Aip Aip08g03321 Chr08 124406411 124410268 -
Apr Apr1g0329 Chr1 3959250 3963781 +
Apr Apr2g1142 Chr2 17679494 17683678 -
Bva Bva06g01547 Chr06 11091035 11095316 +
Bva Bva05g00209 Chr05 1039525 1043744 -
Car Car06g00579 Chr06 5851151 5855165 +
Cca Cca09g02372 Chr09 49079164 49083270 -
Dod Dod09g0104 Chr09 1428424 1432500 -
Gma Gma08g00088 Chr08 757460 761242 -
Gma Gma05g01983 Chr05 41172643 41176542 -
Lal Lal17g0824 Chr17 6104954 6109623 -
Lja Lja1g4351 Chr1 56171001 56174618 +
Lja Lja4g0478 Chr4 3908435 3913069 +
Mal Mal7g4860 Chr7 117136964 117140354 -
Mal Mal2g1360 Chr2 16309307 16312970 +
Mtr Mtr8g3396 Chr8 44485842 44489564 -
Mtr Mtr3g3481 Chr3 48699576 48704061 -
Sto Sto4g0196 Chr4 1466479 1469964 -
Tpr Tpr3g0708 Chr3 6822131 6825919 +
Tpr Tpr3g3291 Chr3 36247764 36252579 -
Tsu Tsu02g00531 Chr02 4490954 4494888 +
Tsu Tsu07g01165 Chr07 9948076 9951611 +
Vra Vra7g3443 Chr7 53747029 53751411 -
Vvi Vvi17g0050 Chr17 419142 419452 +
Vvi Vvi17g0051 Chr17 427702 428203 +
Vvi Vvi17g0052 Chr17 434777 440415 +