Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1404 ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCAGCCCCAAAAACGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCCGTCGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCACCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGCTTCGTCTCGTGGGATTGAAGATAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCGAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACATGGCCCTTGAAAGGTTGCTGTAG 579 0.494 MIDLARVQKELVECSKDAEGSGIKVSPKNDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKASSRGIEDKVQKLVEMGFPEARVRSILEAVGGDENMALERLL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1404 192 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 192 IPR015940 -
Gso6g1404 192 SUPERFAMILY UBC-like 5 150 IPR016135 -
Gso6g1404 192 SMART ubc_7 5 150 - -
Gso6g1404 192 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Gso6g1404 192 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
Gso6g1404 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 187 - -
Gso6g1404 192 Pfam UBA/TS-N domain 157 191 IPR015940 -
Gso6g1404 192 SUPERFAMILY UBA-like 131 192 IPR009060 GO:0005515
Gso6g1404 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 187 - -
Gso6g1404 192 SMART uba_6 156 192 IPR015940 -
Gso6g1404 192 Gene3D - 157 192 - -
Gso6g1404 192 CDD UBCc 6 145 IPR000608 -
Gso6g1404 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Gso6g1404 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1404 Gso-Chr6 13936170 13939480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1404 27 164 Miscellaneous Gene Families AT3G17000 28.671 2.11e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1404 K04649 - gmx:100808816 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1404 6 13936170 13939480 Gso6g1404 6 13936170 13939480 ECH