Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02619 ATGATAGATTTTGCTCGAGTGCAGAAGGAGCTTGTTGAATGCAGCAAAGACGCTGAGGGATCGGGTATTCGAGTAATCCCTAAAAGTGATAACCTTGTTCATTTGATCGGAACCATTCCTGGTCCTATCGGAACTCCCTACGAAGGTGGTGTTTTTCAGATTGATATCACATTACCTGAGGGATACCCATTTGAACCCCCAAAGATGCAGTTTTCAACCAAAGTCTGGCATCCAAATATCAGCAGCCAAAGTGGTGCTATTTGCCTGGACATCTTGAAAGATCAGTGGAGTCCGGCACTGACTCTGAAGACTGCACTACTTTCCGTGCAAGCACTTCTGTCTGCCCCTCAGCCTGATGATCCTCAAGATGCTGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTCAATACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGACATCATCTCGTGGGATTGAAGTTAAGGTACAGAAACTCGTCGAAATGGGATTTCCTGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAGAACTTGGCTCTTGAAAGGCTGCTGTAG 579 0.4594 MIDFARVQKELVECSKDAEGSGIRVIPKSDNLVHLIGTIPGPIGTPYEGGVFQIDITLPEGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKTSSRGIEVKVQKLVEMGFPEAQVRSILEAVGGDENLALERLL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02619 192 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
Car05g02619 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Car05g02619 192 CDD UBA_II_E2_UBC27_like 157 192 IPR041974 -
Car05g02619 192 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 150 192 IPR015940 -
Car05g02619 192 SUPERFAMILY UBC-like 6 151 IPR016135 -
Car05g02619 192 Gene3D - 157 192 - -
Car05g02619 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Car05g02619 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 187 - -
Car05g02619 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 187 - -
Car05g02619 192 CDD UBCc 6 145 IPR000608 -
Car05g02619 192 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Car05g02619 192 SMART ubc_7 5 150 - -
Car05g02619 192 Pfam UBA/TS-N domain 159 191 IPR015940 -
Car05g02619 192 SUPERFAMILY UBA-like 131 192 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02619 Car-Chr5 71243805 71247179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02619 26 133 Miscellaneous Gene Families AT3G17000 32.143 2.58e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02619 K04649 - gmx:100527458 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02619 05 71243805 71247179 Car05g02619 05 71243805 71247179 ECH