Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0046 ATGTGCTTTCAATTCTCAATCTTGTACACTTGTTATTTGGCCCATTTTGGGGTTTTTCCTAGAAAATATCTTGTAATGGCAGGAATTGAGGCCAAGTTTCAGCAGAACCCACCTCTGGGAACACACAAGCTTTTCCTTGGAGCCCATATATGCTTGAGAATTTTGACAGTAACTGCTACATTGACTGCAGCTTGGATGATGATCACCAGCAAGCAAACCGTTGAGGTGTATGGGATCCAAGTTGAAGCCAAGTATAGCTACTCATCAGCTTTCAAGTTCTTCTCCTACGCAAATGCTATTGCATGTGGCTGTTCTGTGCTAACCTTGTTCCCAGCTTTCTCCCTCTTCTATCGAGGCTCGACCCCAATGAAGTTCTTCTTCTTGTTCCTGCATGATTTGTGCATGATGTCTTTGGTGCTGGCTGGTTGTGCTGCTGCAACTGCAATAGGATATGTTGGAAGGTATGGGAATAACCATGCTGGTTGGATGGCCATCTGTGACCAATTTGACGAGTACTGCAACAGAATCAGACTCTCTCTGATGTTCTCTTACTTGGCCTTTGTTTTCATACTGATGCTCACCATTATGTCTGCAAACAAGTCCAGAGAAATTCGAGTCTGA 621 0.4396 MCFQFSILYTCYLAHFGVFPRKYLVMAGIEAKFQQNPPLGTHKLFLGAHICLRILTVTATLTAAWMMITSKQTVEVYGIQVEAKYSYSSAFKFFSYANAIACGCSVLTLFPAFSLFYRGSTPMKFFFLFLHDLCMMSLVLAGCAAATAIGYVGRYGNNHAGWMAICDQFDEYCNRIRLSLMFSYLAFVFILMLTIMSANKSREIRV* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0046 206 PANTHER CASP-LIKE PROTEIN 1U1 49 197 IPR044173 -
Vvi17g0046 206 Pfam Casparian strip membrane protein domain 48 189 IPR006702 -
Vvi17g0046 206 NCBIfam plant integral membrane protein TIGR01569 50 200 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0046 Vvi-Chr17 364832 366466 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0046 - - vvi:100261186 359.377