Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0777 AACCAATATACATCACTCACTCACAAGTGTGAAAAGCGACAAAAAAACAACAGACCAGAAGCTTTATTCTTTCTCCTCGCTTCTTCTGTACAGCACCCAAGATTGAAGATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGTAGCAAGGACGCGGAGGGATCGGGCATCAAAGTGAGTCCCAAAAGCGACAACCTTGTCCTCTTGATCGGCACCATTCCTGGTCCTCTCGGAACTCCCTATGAAGGGGGCATTTTCCAGATTGACATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCACCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTGTCTGCTCCTCAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTACCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGTGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAGGCTCAAGTAAGGAGCATTTTGGAATCTGTAAGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAG 687 0.4774 NQYTSLTHKCEKRQKNNRPEALFFLLASSVQHPRLKMIDLARVQKELVECSKDAEGSGIKVSPKSDNLVLLIGTIPGPLGTPYEGGIFQIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKESSRGIEDKVQKLVEMGFPEAQVRSILESVSGDENLALERLL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0777 228 SUPERFAMILY UBC-like 35 186 IPR016135 -
Aed10g0777 228 Gene3D Ubiquitin Conjugating Enzyme 36 189 IPR016135 -
Aed10g0777 228 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 186 228 IPR015940 -
Aed10g0777 228 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 112 128 IPR023313 -
Aed10g0777 228 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 38 186 IPR000608 -
Aed10g0777 228 CDD UBCc 42 181 IPR000608 -
Aed10g0777 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39 223 - -
Aed10g0777 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 39 223 - -
Aed10g0777 228 SUPERFAMILY UBA-like 166 228 IPR009060 GO:0005515
Aed10g0777 228 Pfam Ubiquitin-conjugating enzyme 42 180 IPR000608 -
Aed10g0777 228 Pfam UBA/TS-N domain 193 227 IPR015940 -
Aed10g0777 228 SMART ubc_7 41 186 - -
Aed10g0777 228 Gene3D - 193 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0777 Aed-Chr10 6436766 6440151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0777 63 200 Miscellaneous Gene Families AT3G17000 28.671 6.74e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0777 K04649 - gmx:100527458 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0777 10 6436766 6440151 Aed10g0777 10 6436766 6440151 ECH