Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0197 ATGATAGACTTCGCTCGCGTGCAGAAGGAGCTTGTAGAATGTGGCAAAGACGCCGAAGGATCCGGCATCACAGTCGTCCCCAAAGCCGACAATCTCGCACGTTTGATCGGAACAATTCCTGGCCCTGTCGGCACGCCTTACGAAGGGGGCATCTTCAAAATTGACATCACATTGCCAGATGGATACCCATTTGAACCCCCTAAAATGCAGTTTGCAACGAAAGTGTGGCACCCTAACATCAGCAGTCAAAGTGGAGCTATTTGCCTTGACATCTTGAAGGACCAGTGGAGCCCTGCACTGACTCTAAAAACGGCACTGCTTTCTGTGCAAGCGCTTCTCTCTGCTCCTGCACCCGATGATCCTCAAGATGCCGTTGTAGCACAGCAGTATCTCAAAGAATATCAAACATTTGTTGGCACTGCTCGTTATTGGACTGAAACTTTTGCGAAGACATCTTCCCTTGGGATCGAAGAAAAGGTACAGAAGCTTGTGGAAATGGGGTTTGCGGAAGCTCAAGTGAGGAGCACTTTGGAATCtgttggtggtgatgaaaactTGGCTCTTGAAAGGCTTTGCTCAAGCTAA 585 0.4735 MIDFARVQKELVECGKDAEGSGITVVPKADNLARLIGTIPGPVGTPYEGGIFKIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKEYQTFVGTARYWTETFAKTSSLGIEEKVQKLVEMGFAEAQVRSTLESVGGDENLALERLCSS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0197 194 Pfam UBA/TS-N domain 157 191 IPR015940 -
Sto4g0197 194 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Sto4g0197 194 Gene3D - 149 194 - -
Sto4g0197 194 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 194 IPR015940 -
Sto4g0197 194 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 188 - -
Sto4g0197 194 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Sto4g0197 194 Gene3D Ubiquitin Conjugating Enzyme 2 148 IPR016135 -
Sto4g0197 194 SUPERFAMILY UBC-like 6 150 IPR016135 -
Sto4g0197 194 CDD UBA_II_E2_UBC27_like 157 192 IPR041974 -
Sto4g0197 194 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Sto4g0197 194 CDD UBCc 6 145 IPR000608 -
Sto4g0197 194 SUPERFAMILY UBA-like 132 193 IPR009060 GO:0005515
Sto4g0197 194 SMART ubc_7 5 150 - -
Sto4g0197 194 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 188 - -
Sto4g0197 194 SMART uba_6 156 193 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0197 Sto-Chr4 1478888 1481032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0197 6 133 Miscellaneous Gene Families AT3G17000 29.545 2.39e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0197 K04649 - mnt:21392186 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0197 4 1478888 1481032 Sto4g0197 4 1478888 1481032 ECH