Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2418 ATGATAGACTTTGCTCGCGTGCAGAAGGAGCTGGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTGAGTCCGAAAAGCGACAACCTCGTCCTCTTGATGGGCACCATTCCTGGTCCTGTCGGAACTCCCTATGAAGGGGGCATTTTCCAGATTGACATCACATTGCCAGACGGATACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTCTGGCACCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGACATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCCCTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTGGTGGCACAGCAGTATCTGAAAGAGTATCAGTCATTTGTTAACACCGCTCGCTGCTGGACAGAAAGTTTTGCTAAGGCATCGTCTCGTGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTGCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTCCCAAGTGTGA 588 0.5 MIDFARVQKELVECSKDAEGSGIKVSPKSDNLVLLMGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKEYQSFVNTARCWTESFAKASSRGIEDKVQKLVEMGFAEAQVRSILEAVGGDENLALERLLSQV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2418 195 Pfam Ubiquitin-conjugating enzyme 6 142 IPR000608 -
Ssu1g2418 195 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 188 - -
Ssu1g2418 195 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 188 - -
Ssu1g2418 195 SUPERFAMILY UBA-like 127 194 IPR009060 GO:0005515
Ssu1g2418 195 Gene3D - 157 193 - -
Ssu1g2418 195 Pfam UBA/TS-N domain 157 191 IPR015940 -
Ssu1g2418 195 SUPERFAMILY UBC-like 5 150 IPR016135 -
Ssu1g2418 195 CDD UBCc 6 145 IPR000608 -
Ssu1g2418 195 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 194 IPR015940 -
Ssu1g2418 195 SMART uba_6 156 193 IPR015940 -
Ssu1g2418 195 Coils Coil 188 195 - -
Ssu1g2418 195 Gene3D Ubiquitin Conjugating Enzyme 2 153 IPR016135 -
Ssu1g2418 195 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Ssu1g2418 195 SMART ubc_7 5 150 - -
Ssu1g2418 195 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2418 Ssu-Chr1 67459910 67462402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2418 27 164 Miscellaneous Gene Families AT3G17000 27.972 4.41e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2418 K04649 - gmx:100808816 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2418 1 67459910 67462402 Ssu1g2418 1 67459910 67462402 ECH