Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00292 ATGGGTGCCAACAATTCAAGGCTGCCAGGAAGTGGGGGAGAGGTGTTGCCGGCTAAAATCCGGCCTCTACTCCGCCGCCGAGTGGAAGAGTTGAGAAGACGGAGGAGCGGAGCCACTATGGGAAGAGAACAAGAAGAAGAGGCTACATTCTCAAAGAAGCATATTCTCAATTTTGATGATGAAAGTGAGAGTTCTACAATTGCCAAACGTGGAGATAGCCTCTCCAAAGTGGTTCCCTTGCCCGTTGAAAAGAAGGATGAGGTTGTTGACAGTgatgaagaggaagaagaagaagaagaagaaaacgaggaggatgatgaaattgaaagtggaagaTTTATAGGTCCTGCCTCGCCTAGCTTCAAAATTTATTGCATTCAACCTGAGAATAGTAAAAGAGAGGCAGAATTATGTCGCTCAAATGCTCTAGGTGATCATGAAAATCAAACGTGTGTGTTCCAGAAATCACCTAGTGCTAACAGTGTCGAAAGCTCTGCATCAGCTGACACCAACGAGATGCTTCAGCTTGTTGAAATGAAATCAGCTCCGAAGAGAAAAGGAAATAAGAAACAGAAATTCGGGGCAATGAAGAATAATATATTCCACCACCGAGGTGAAAGGTTGAAGATGGTAGACTTTGCTCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTGAGTCCCAAAAGCGACAACCTCGTCCTCTTGATCGGCACCATTCCTGGTCCTCTCGGAACGCCCTATGAAGGGGGCATTTTCCAGATTGACATCACATTACCCGATGGATACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTCTGGCACCCTAATATCAGCAGCCAGAGTGGAGCTATTTGCCTGGACATCTTGAAGGACCAGTGGAGCCCAGCACTCACACTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAGAGTTTTGCTAAGGAATCGTCTCGTGGGATTGAAGATAAGGTACAGAAACTCGTAGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACGTGGCTCTTGAAAGGTTGCTGTTGCCGCAAGGGTGA 1218 0.4516 MGANNSRLPGSGGEVLPAKIRPLLRRRVEELRRRRSGATMGREQEEEATFSKKHILNFDDESESSTIAKRGDSLSKVVPLPVEKKDEVVDSDEEEEEEEEENEEDDEIESGRFIGPASPSFKIYCIQPENSKREAELCRSNALGDHENQTCVFQKSPSANSVESSASADTNEMLQLVEMKSAPKRKGNKKQKFGAMKNNIFHHRGERLKMVDFARVQKELVECSKDAEGSGIKVSPKSDNLVLLIGTIPGPLGTPYEGGIFQIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKESSRGIEDKVQKLVEMGFPEAQVRSILEAVGGDENVALERLLLPQG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00292 405 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 211 359 IPR000608 -
Cca03g00292 405 SUPERFAMILY UBC-like 213 359 IPR016135 -
Cca03g00292 405 Pfam Ubiquitin-conjugating enzyme 215 353 IPR000608 -
Cca03g00292 405 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 212 397 - -
Cca03g00292 405 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 285 301 IPR023313 -
Cca03g00292 405 Gene3D - 366 401 - -
Cca03g00292 405 MobiDBLite consensus disorder prediction 32 115 - -
Cca03g00292 405 SMART ubc_7 214 359 - -
Cca03g00292 405 Coils Coil 82 109 - -
Cca03g00292 405 CDD UBCc 215 354 IPR000608 -
Cca03g00292 405 Gene3D Ubiquitin Conjugating Enzyme 209 361 IPR016135 -
Cca03g00292 405 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 359 403 IPR015940 -
Cca03g00292 405 Pfam UBA/TS-N domain 366 400 IPR015940 -
Cca03g00292 405 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 212 397 - -
Cca03g00292 405 SMART uba_6 365 402 IPR015940 -
Cca03g00292 405 MobiDBLite consensus disorder prediction 88 108 - -
Cca03g00292 405 MobiDBLite consensus disorder prediction 32 67 - -
Cca03g00292 405 SUPERFAMILY UBA-like 340 401 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00292 Cca-Chr3 4401133 4412164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00292 236 342 Miscellaneous Gene Families AT3G17000 33.333 3.08e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00292 K04649 - gmx:100527458 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00292 03 4401133 4412164 Cca03g00292 03 4401133 4412164 ECH