Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0043 ATGGATTGCTCTTCGCCTTCGGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGTATCTTCGTATTCAGGACTGTTTTGGCCGGCCAATATCGAGTGCTCCAGATGCTTGGTTTGATGTAGTTGAAAGGTTCTCCAATGACAATAACAAGACACTAAAACGAACCACAAAGATAAGTAAGTGTCTTAACTTGGGGTCATACAATTACCTTGGATTTGCCGCATCAGATGAATTCTGCACACCACGTGTAATCGAGTCTTTGAAGAGGTTTTCCCCAGGTACCTGTAGCACCCGTGTTGATGGAGGCACCACAACATTGCATAAAGAAGTGGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGGGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATATACCATCTCACTTGGAGAAAGTTTTGAGAGAACAAATTGCTGAGGGACAACCCCGGACACATAGACCATGGAAGAAGATAATTGTTGTTGTGGAAGGAATATATAGCATGGAAGGGGAACTCTGCAAACTCCCAGAGATTGTTGCAATCTGCAAGAAATATAAGGTCTGCTCTTCTACTCAAAAGAACTTGCAATCCAGTGGTGCATGCTACAGATATGCTAGCATGACTTATAAGGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATATTATGATGGGAACTTTCACAAAATCTTTTGGATCATGTGGTGGTTATATTGCTGGATCCAAGGAGCTGATTCAATATCTAAAGTACACTTGTCCTGCTCATCTATATGCAACCTCAATATCACCACCAGCTGCACAACAGATTATATCTTCCATCAAGGTTATTCTTGGAGAAGATGGCTCTAGTAGAGGGGCTCAGAAATTGGCACGAATACGTGAGAACAGTAACTTTTTCAGATCAGAACTGCAGAAGATGGGCTTTGAGGTTCTTGGAGATAATGATTCTCCTGTAATGCCAATAATGCTTTACAATCCAGCCAAAATTCCTGCCTTTTCGCGGGAGTGTCTCAAACAGAATGTTGCTGTTGTGACAGTTGCTTTTCCAGCTACTCCACTTCTTTTGGCCAGGGCACGGATCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGCCCAGGAAGCAACAGCTGGAGGAAGGCAGAGTGAAACTGGAGTGA 1437 0.4454 MDCSSPSGYAPICLGLEDFYIRRLYLRIQDCFGRPISSAPDAWFDVVERFSNDNNKTLKRTTKISKCLNLGSYNYLGFAASDEFCTPRVIESLKRFSPGTCSTRVDGGTTTLHKEVEECVANFVGKPAAIVFGMGYVTNSAILPVLIGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNIPSHLEKVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEGELCKLPEIVAICKKYKVCSSTQKNLQSSGACYRYASMTYKAYVYLDEAHSIGAVGKTGRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAQQIISSIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVTVAFPATPLLLARARICISASHTREDLIKGLEVISRVGDLVAIKYFPAEPRKQQLEEGRVKLE* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0043 478 ProSitePatterns Aminotransferases class-II pyridoxal-phosphate attachment site. 297 306 IPR001917 GO:0016740
Vvi17g0043 478 CDD KBL_like 65 453 - -
Vvi17g0043 478 Pfam Aminotransferase class I and II 66 236 IPR004839 GO:0009058|GO:0030170
Vvi17g0043 478 Pfam Aminotransferase class I and II 257 448 IPR004839 GO:0009058|GO:0030170
Vvi17g0043 478 Gene3D Aspartate Aminotransferase, domain 1 346 454 IPR015422 GO:0003824
Vvi17g0043 478 Gene3D - 86 345 IPR015421 GO:0003824
Vvi17g0043 478 SUPERFAMILY PLP-dependent transferases 61 452 IPR015424 -
Vvi17g0043 478 PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE 11 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0043 Vvi-Chr17 338381 343360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0043 4 478 Acyl Lipid Metabolism Gene Families AT5G23670 80.842 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0043 K00654 - vvi:100249169 876.7