Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0047 ATGGGCTTGCCTCAAGTGTCCTCCAGTGCGGTCGCTGAGGAAGTGACCACATCATTGAGCACATTTGTGCAAACTCCATCTCGATTTGTTGGTGTGAGCAGCTGTGATTTAAGTGGATTGCATGGGGGAAACCCAGGCAATCGAATGGCAATGGAATTGCCATGCTCTTCTTTAGGAGATTTCCAAAGGAAAACCATCCTGGAGCTTCCGCAGGACCCAGGTGGCCTGGATACTCACAATGAGGGTACATCCAACTTACACAGGTTGAAGATTGGCTCTACAGAGAAAAATGGCTTGTTCACTCGTAAAAGTTCTCGGAATATTCAGAGTCCTGTTTCAAGAATTGTGGGTTTTGAATCAAGGGCTCTCAGTTCTCCTGCTAATATCTTTGAGGGGAATCAACCCTCATCTGTTGTTGCTTGTATCACCGGCGATGCAACTGATGCCAGTGGGTTGCAAGTGAGGAAGCGGTTATTGTCACCTTTGAGTGGCATGCTTCTCCCAGATCAATTTGATGGTGATGCCCATGACACTCGTCACCTTATTCATCAGACTGCTCCCCAGGGATGTAGTGACAATTATAATGTTTCTGAGTCACAAGATCATAAAAAAGCTAATATCGAGAGCTCCAATTATTTCAGTCCTCCAATCTGGTCTGCACCTGGTTCCCCAGAGTGGCAGAATTCTCCTGATGATACCTATGGGGCAAATTCCATTTTTCTCACTGATGGCCCTTTGCTTGGGAAGAAGGGCCTACTGTCTCATAATCCCGTTTTATCTTCACCTGGACTTAACTACTTTGGAGAAACAGCTGAGTTGGGGTCCCACTCTGAAGCAATAGCTATATCTTCAATAAAGGTGCTCTCCCCTCCACTATCTTTATCTCCTCTTGGTCCAAAATTCCCTGAAAGAATAAAAGCTGCTGGAAGATGCAAGGATAATAGGGAAGAATTAGATGATGACTATTTGACCTTAAAGGATGTGGAACAGTCGCTTGATAGAACTGTCTCAGGCCTTTTATCTTCCCAGAAGGAAGAGTACTTTGGGTTGTCAAGCAAATCATTTGAAGATATTGATCTTCTCCAGAAAAAATTAAACCTGTTTACACCTGAGATTATCTCGAGCATGGGTGAGCATTGTGGGCATGATTCAACCATTAATCCACAATGTATCAAGTATGTCAGAATTTTGAGTGGATTGCATGTTAGAAGGTCCTTAGTTGGTTCATTTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAGAAAATCGATGGTTTCCTAGCTGTTCTTAATGTCACTGGAGGGAATTTCTCACCCAAACCTAAGAAGCTTCCTTTTGCAGTAACTAGTGTGGATGGGGATAACTACTTACTGTACTATTCATCAATAGATCTTGCTGGGAATTTTCCATCAGACAAGTACAGAGGCCCAAAAATGAAGAGGAGCCTTAGCATTAATGACTCACGAGCAGAAAAGAACCGCCTGCGTATACCAATGAAAGGGCGGATACAACTGGTACTTAGCAATCCAGAAAAGACGCCCATTCACACCTTTCTTTGTAACTATGATTTGAGTGACATGCCATCTGGTACCAAGGGAATGGAGGACAAAGAGTTCCTCGCATGA 1641 0.44 MGLPQVSSSAVAEEVTTSLSTFVQTPSRFVGVSSCDLSGLHGGNPGNRMAMELPCSSLGDFQRKTILELPQDPGGLDTHNEGTSNLHRLKIGSTEKNGLFTRKSSRNIQSPVSRIVGFESRALSSPANIFEGNQPSSVVACITGDATDASGLQVRKRLLSPLSGMLLPDQFDGDAHDTRHLIHQTAPQGCSDNYNVSESQDHKKANIESSNYFSPPIWSAPGSPEWQNSPDDTYGANSIFLTDGPLLGKKGLLSHNPVLSSPGLNYFGETAELGSHSEAIAISSIKVLSPPLSLSPLGPKFPERIKAAGRCKDNREELDDDYLTLKDVEQSLDRTVSGLLSSQKEEYFGLSSKSFEDIDLLQKKLNLFTPEIISSMGEHCGHDSTINPQCIKYVRILSGLHVRRSLVGSFEESLLSGRLSSGKVSQKIDGFLAVLNVTGGNFSPKPKKLPFAVTSVDGDNYLLYYSSIDLAGNFPSDKYRGPKMKRSLSINDSRAEKNRLRIPMKGRIQLVLSNPEKTPIHTFLCNYDLSDMPSGTKGMEDKEFLA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0047 546 SMART DUF4210_2 406 465 IPR025261 -
Vvi17g0047 546 PANTHER GH03947P 12 537 - -
Vvi17g0047 546 Pfam Domain of unknown function (DUF4210) 406 443 IPR025261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0047 Vvi-Chr17 370947 376176 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0047 - - vvi:100266395 1051.2