Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0695 ATGATCGATTTTTCTCGCGTTCAGAAGGAACTTGTTGAATGCAGCAAAGATACTGAAGGATCAGGCATCAAAGTTACCCCGAAAAGCGACAATCTTGTTCGTCTCAATGGAACCATTCCTGGCCCTATTGGAACTCCCTATGAAGGGGGCATTTTCCAAATTGACATTACTATTCCAGATGGGTACCCGTTTGAGCCCCCAAAGATGCATTTTACAACCAAAGTTTGGCACCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTAGACATATTAAAGGATCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCCCAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAGTATCTGAAAGAGTACCAGACATTTGTTAGCACCGCTCGTTACTGGACAGAAAGTTTTGCCAAGACATCTTCTCGCGGGGTTGAAGATAAGGTACAGAAACTTGTAGAGATGGGGTTCCCCGAAGCTCAAGTTAGGAGTGTTTTGGAAGCTGTTGGCGGTGATGAAAACTTGGCTCTTGAGAGAAAAACAGATCAAGATTATGCTAGAGATATTCGTTCAGCTTTGACTCTCGCCGAGCGAAAAGGAATCATTTGCTCAGTGAGATCAATTCTTGTTGAGCAAAACCGGTGCTTGAAGTTTTGCGATACTCGCTCAGTGAGCCAAAGATCTCACTCAGAGAGATCCAGATCTTGCTTTGTGAGCTCCTCTTCATTCATCGAAACAAAGGCAGGAGATTAG 786 0.4529 MIDFSRVQKELVECSKDTEGSGIKVTPKSDNLVRLNGTIPGPIGTPYEGGIFQIDITIPDGYPFEPPKMHFTTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKEYQTFVSTARYWTESFAKTSSRGVEDKVQKLVEMGFPEAQVRSVLEAVGGDENLALERKTDQDYARDIRSALTLAERKGIICSVRSILVEQNRCLKFCDTRSVSQRSHSERSRSCFVSSSSFIETKAGD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0695 261 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 157 189 IPR015940 -
Lal4g0695 261 CDD UBCc 5 145 IPR000608 -
Lal4g0695 261 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
Lal4g0695 261 SUPERFAMILY UBA-like 153 189 IPR009060 GO:0005515
Lal4g0695 261 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 188 - -
Lal4g0695 261 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 188 - -
Lal4g0695 261 SMART ubc_7 5 150 - -
Lal4g0695 261 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Lal4g0695 261 SMART uba_6 156 193 IPR015940 -
Lal4g0695 261 Pfam UBA/TS-N domain 157 189 IPR015940 -
Lal4g0695 261 SUPERFAMILY UBC-like 6 150 IPR016135 -
Lal4g0695 261 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Lal4g0695 261 Gene3D - 156 190 - -
Lal4g0695 261 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0695 Lal-Chr4 5543702 5548205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0695 27 164 Miscellaneous Gene Families AT3G17000 27.273 6.17e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0695 K04649 - gmx:100527458 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0695 4 5543702 5548205 Lal4g0695 4 5543702 5548205 ECH