Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00290 ATGGTTCAATTTCAAATAAGATCATTAACTGCTCATGTTAATGGTTTTGGAGGAAATGGATATTCATCAATTGTATGTAATGTCACTAGTGATGCAACTAAAGCTTATGAGTCGCAAGTCGGAAAAGAATTAATATCACCTTTGAATGGGATGGTGCTTGCGAATCATTTTAAAGGTGATCCACTAGAAATTGGTGGTGGTATTTATCAAAGCTGTTCAAAAGATGGGGATGATAATTCTAATGCTTCTCATGAGTATAAAAAAGTTCATACTGTAAACAACAATCCTATTCACTCTATGATCTGGTCTACATCTTGTTATCAAGAATTTTTAAATTCATTTAGTAATGACTCTACTATAAACCATAACGTACCTAGTCATCGTCATTCACATTGTGAACATAAAGAAATAACTAAAACAAGGTCACAACCAACTACATTGTCCATACCACCACTAAAGGTGTCATCATCACCCTCACCTTTGTCTCCTCTAGGTAAAATATCTTCTAAAAATGAAAATTTGGGAGAATGTATAAATATTGATAATATCTTGGATGATGGAAATTTGTCTTTTAATAATGTGGGACAATCACTTGATAGAACTTTTAAAGGCATTTTATCTACACAAGAGATAACAAGTAAAACACAACTCAATTCCAACAATATGCAACAAAAATCTGGCTTATTTACAGCCGATAATATGATTGATATGAAAGAGCATTTGACTCATCGCGCAAGCTTTCATCATCATGATGCCAAGTTATATGGAACTATGAGTAGAGTACCAATTAGAAGGTCCCTAGTTGGTTCATACGAGGAATCTTTGCTATCCGGTCGCCTACTATCTGGGAAAGTTAGTCAGAAAATTGAAGGATTTCTTGCCATGTTGAATGTAACTGGTGGAAATTTCTCACCTCAATCACAAAAAATACCATTTGTAGTAACTAGTGTGGATGGATACAAGTACTTACTTTATTATTCATCAATTAGTCTTTCAGGAAGTCTATTATCAAGCAAGTCTAGAGTTGCTAAATTACAGAGAACCCTTAATGTGGAAGAATCGCGATTTAAAAAGACCACCCGTATACGTATACCTATGAAAGGGAACATTCAACTGGTTCTCAACAATCCAGAGAGGACACCTATTCATACCTTTATTTGCAATTACGATTTGAGTGACATGCCTGCTGGTACCAAGACATTCTTGCGACAAAAGGTCACTTTAACTACGTCTAAAACAATGTCTATGATGGGAAAGGAAAGCCAAACAAACTTTGGCAACAGAGCTGATATCAAGTCTTCATTAATCTCACTCTCTAGTCAGATAAATAAAGATTTTCTCAACTCAAAATGTGAAAAACTTGATAGTTTTACACGTTCAAAGGCAGGCTTTTTGCTTTATGTTCTCCACCTTCGTTTTTTATGCCCTTTGCCTAAAAAACGTTCAAGGTCCGTTCATAAGTGTGAATCTAGTTCTATCTCTGCAAAAGTGAGAAACATTACGGACATTGAACATGAAAGAAGCTTCTACTTGTATGATGATATGAGGGTAGTGTTTCCTCAACGTCATTCAGATTCCGATGAAGGCAAGTTACATGTGGAATATCATTTCCCTTCAAATCCAAAATATTTTGACATCAGCTATTGA 1647 0.3503 MVQFQIRSLTAHVNGFGGNGYSSIVCNVTSDATKAYESQVGKELISPLNGMVLANHFKGDPLEIGGGIYQSCSKDGDDNSNASHEYKKVHTVNNNPIHSMIWSTSCYQEFLNSFSNDSTINHNVPSHRHSHCEHKEITKTRSQPTTLSIPPLKVSSSPSPLSPLGKISSKNENLGECINIDNILDDGNLSFNNVGQSLDRTFKGILSTQEITSKTQLNSNNMQQKSGLFTADNMIDMKEHLTHRASFHHHDAKLYGTMSRVPIRRSLVGSYEESLLSGRLLSGKVSQKIEGFLAMLNVTGGNFSPQSQKIPFVVTSVDGYKYLLYYSSISLSGSLLSSKSRVAKLQRTLNVEESRFKKTTRIRIPMKGNIQLVLNNPERTPIHTFICNYDLSDMPAGTKTFLRQKVTLTTSKTMSMMGKESQTNFGNRADIKSSLISLSSQINKDFLNSKCEKLDSFTRSKAGFLLYVLHLRFLCPLPKKRSRSVHKCESSSISAKVRNITDIEHERSFYLYDDMRVVFPQRHSDSDEGKLHVEYHFPSNPKYFDISY 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00290 548 Pfam Domain of unknown function (DUF4210) 267 311 IPR025261 -
Cca03g00290 548 PANTHER GH03947P 21 547 - -
Cca03g00290 548 SMART DUF4210_2 267 326 IPR025261 -
Cca03g00290 548 MobiDBLite consensus disorder prediction 125 163 - -
Cca03g00290 548 Pfam Chromosome segregation during meiosis 465 546 IPR033473 -
Cca03g00290 548 MobiDBLite consensus disorder prediction 141 163 - -
Cca03g00290 548 PANTHER MEIOSIS CHROMOSOME SEGREGATION FAMILY PROTEIN 21 547 - -
Cca03g00290 548 MobiDBLite consensus disorder prediction 125 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00290 Cca-Chr3 4377740 4384049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00290 - - ccaj:114916839 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00290 03 4377740 4384049 Cca03g00290 03 4377740 4384049 ECH