Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0048 ATGGTGGACTTGGGCAGAGTGCAGAAGGAGCTTCAGGAATGCAACAAGAACATGGACGTTTCCGGCATTAACGTGAAGCCTAAAGGCGACAGCCTCACGCATTTGATCGGAACTATTCCTGGGCCCATGGGCACGCCCTACGAAGGGGGCATCTTCCAAATCGACATCGTTTTGCCTGATGGGTACCCTTTTGAGCCTCCAAGAATGCAATTTGCCACGAAAGTTTGGCACCCTAATATCAGCAGTCAAAGTGGAGCAATTTGCTTGGACATTCTGAAGGACCAGTGGAGCCCTGCACTTACTCTGAAGACAGCACTCCTTTCTGTACAAGCCTTGCTCTCTGCCCCTCAACCTGATGATCCTCAAGACGCTGTGGTGGCTCAACAGTATCTTAAAGACTATCAGACCTATGTTGGCACAGCTCGATATTGGACAGAAAATTTTGCATCTTCTCGTGGACTTGAGGAAAAGGTACAAAAACTTGTGGAGATGGGCTTCCCTGAAGCTTCAGTAAGGAGTACCCTGGCAGCTTTTGGTGGTGATGAAAACTTGGCTCTTGAAAAGCTCTGCTGTGGCTAG 579 0.4905 MVDLGRVQKELQECNKNMDVSGINVKPKGDSLTHLIGTIPGPMGTPYEGGIFQIDIVLPDGYPFEPPRMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTYVGTARYWTENFASSRGLEEKVQKLVEMGFPEASVRSTLAAFGGDENLALEKLCCG* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0048 192 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
Vvi17g0048 192 Pfam UBA/TS-N domain 155 188 IPR015940 -
Vvi17g0048 192 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Vvi17g0048 192 SUPERFAMILY UBA-like 147 190 IPR009060 GO:0005515
Vvi17g0048 192 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 153 192 IPR015940 -
Vvi17g0048 192 SUPERFAMILY UBC-like 6 150 IPR016135 -
Vvi17g0048 192 CDD UBA_II_E2_UBC27_like 155 190 IPR041974 -
Vvi17g0048 192 Gene3D - 154 190 - -
Vvi17g0048 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 32 137 - -
Vvi17g0048 192 CDD UBCc 6 145 IPR000608 -
Vvi17g0048 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Vvi17g0048 192 SMART uba_6 154 191 IPR015940 -
Vvi17g0048 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Vvi17g0048 192 SMART ubc_7 5 150 - -
Vvi17g0048 192 FunFam ubiquitin-conjugating enzyme E2 27 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0048 Vvi-Chr17 394402 397526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0048 4 133 Miscellaneous Gene Families AT3G17000 29.851 1.53e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0048 K04649 - vvi:100259387 394.43