Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0052 ATGGATAGTGCAGTCAAGCCTAAGACAAGAGTGGCATTTGTGCTGATTGATGGCATAGGAGATGTCTCTTTGCCAAGGTTGGGATACAAGACTCCTCTGCAAGCAGCCAAAATACCAAATTTAGATGCCATTGCATCTGCTGGAGTTAATGGTCTCATGGATCCTGTTGAAGTAGGCTTGGGTTGTGGAAGCGACACCGCACACCTTTCTTTATTGGGTTATAACCCAAGAATATATTACCGAGGCCGAGGTGCATTTGAGTCCATGGGTGCTGGATTAGCAATGTTACCTGGAGATATTGCATTCAAGTCAAACTTTGCAACTTTAGATGAGAAGACTGGAATAGTCACCAGTAGAAGGGCTGACAGGCACTTCGAAGAAGAAGGCCCCATCCTCTGTGCTGCACTGGATGGAATGAAGCTGCCATCTTTTCCTCAGTATGAAGTCAGAGTCAGGTATGCAACAGAGCATAGATGCGGAGTGGTTGTGAAAGGACCAAATTTGAGTGGAAATATATCAGGAACAGACCCATTAAAGGATAACCGTTTGCTTTTACAAGCTACAGCTCTAGATGATACTGATGAAGCAAAGCACACAGCTGCAGTTGTTAATGAATTGTCCAAGGAGATATCACGAATTCTTGTTTCTCACCCTTTGAACGCAAAGCGGGCAGCAGAAGGAAAGAACATTGCTAATGTTGTCCTTTTACGAGGTTGCGGTATTTGCATTGAGGTTCCTCCGTTTGAAAAGAAACATGGGCTATGGCCATGCATGGTAGCTCCCACTAAAATTATAGCTGGCCTGGGCTTATCACTTGGTATTGATATCCTAGAAGCTCCCGGAGCAACTGGAGACTATCGAACACTTCTAACTTCCAAAGCAACTGCCATAGCTAAAGCACTATCAGCTCCTTTGCAGTCTTGCCCTAGTGTTTTTGTACCAGGGGAGGATGAGCACAAACCTGGCCGATCGGATGGCTATGATTTTGGGTTTCTTCACATTAAGGCTATTGATGATGCAGGCCATGACAAGGCGAGCATTTTCAAAGTCAAAGCAATGGAAGCTGTAGACAGAGCTATAGGACAGCTGGCCAGGCTCCTCTGGCAGGCAGAATCAACTGGGAAATTTGAATACTATCTTTGTGTTACTGGAGACCATTCTACTCCAGTTGAATATGGAGATCACAGTTTTGAACCTGTTCCATTTGCAATTTGTCAGTTGAAAGACTTTGTTGATGCAATGGGTGGAGAAGCCGCCATCATGAAAACTTCACTTGAACCATTCCCTCTTCCAACCATCAAGGGGGATGAAGATCTAACAGAAGGTTTGGAAAAGATGGAAGAGAGAAGTAAACAAGCTTTCAATGGTGATTCGGTTTCAGAATTTACTGAAATAGCAGCTGCAAGGGGATGTCTTGGGCGATTCTCAGGGAGCGAGATGATGGGAATTATTAAGACATATCTTAAGCTAAAAGCATGA 1479 0.4429 MDSAVKPKTRVAFVLIDGIGDVSLPRLGYKTPLQAAKIPNLDAIASAGVNGLMDPVEVGLGCGSDTAHLSLLGYNPRIYYRGRGAFESMGAGLAMLPGDIAFKSNFATLDEKTGIVTSRRADRHFEEEGPILCAALDGMKLPSFPQYEVRVRYATEHRCGVVVKGPNLSGNISGTDPLKDNRLLLQATALDDTDEAKHTAAVVNELSKEISRILVSHPLNAKRAAEGKNIANVVLLRGCGICIEVPPFEKKHGLWPCMVAPTKIIAGLGLSLGIDILEAPGATGDYRTLLTSKATAIAKALSAPLQSCPSVFVPGEDEHKPGRSDGYDFGFLHIKAIDDAGHDKASIFKVKAMEAVDRAIGQLARLLWQAESTGKFEYYLCVTGDHSTPVEYGDHSFEPVPFAICQLKDFVDAMGGEAAIMKTSLEPFPLPTIKGDEDLTEGLEKMEERSKQAFNGDSVSEFTEIAAARGCLGRFSGSEMMGIIKTYLKLKA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0052 492 Gene3D Alkaline Phosphatase, subunit A 172 488 IPR017850 -
Vvi17g0052 492 CDD iPGM_like 10 488 IPR004456 GO:0003824|GO:0046537
Vvi17g0052 492 PANTHER COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE 1 491 IPR004456 GO:0003824|GO:0046537
Vvi17g0052 492 Pfam Metalloenzyme superfamily 10 407 IPR006124 GO:0003824|GO:0046872
Vvi17g0052 492 SUPERFAMILY Alkaline phosphatase-like 10 406 IPR017850 -
Vvi17g0052 492 Gene3D Alkaline Phosphatase, subunit A 7 114 IPR017850 -
Vvi17g0052 492 Pfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 45 220 IPR004456 GO:0003824|GO:0046537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0052 Vvi-Chr17 434777 440415 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0052 - - vvi:100242333 979.548