Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0044 ATGGGGAAAACGACGTCGTCTAGTGGAGGGAAGCAGGGGCTGGGATGGATGGAGTGGCTGAGGGGATGGCTGTATGTGATATACGAGATGCTGTTTCAGAGAATCTCCGCCAGCCATTTGCAGAACCCCTTGCCTTTGCCTCCTCTCCACGATCTCACCTGCATCATCACCGGATCTACCAGCGGAATCGGCCTCCAAATCGCCAGACAGTTGGCGGAAGCAGGGGCGCATGTGGTTATGGCGGTGAGAAATTCCAAGGCGGCTAATGATTTGATTCAGAAGTGGCAGAGTGAGTGGTCTGGGAAAGGCCTTCCTCTCAACATTGAGGTGATGGAACTTGATCTCCTCTCCTTGGATTCTGTTGCGAGATTTTGTGAAGCGTGGAATGCGCGATCAGCACCTTTGCATGTTCTTATAAATAATGCGGGAATATTTTCCATTGGAGAACCACAAAAATTTTCAAAGGACGGGTATGAAGAACACATGCAAGTGAATCATCTGGCTCCAGCATTGCTTTCAATATTGCTTTTGCCATCCCTTATTAGAGGCTCTCCAAGTCGAATTGTTAATGTGAATTCCGTTATGCATTACATTGGCTTTGTTGACACGGAAGATATGAATGTTGTTTCTGGGAAAAGAAAATATACAAGTTTGGTTGGATACTCTAGCAGCAAGCTAGCACAGGTCCAGTTTAGCAGTGTCCTCCATAAGCGGCTACCTGCTGAAGCTGGTGTTAGTGTAGTATGTGTGTCACCTGGAGTGGTCCAAACAAACGTTGCAAGGGATCTTCCTAGAATTGTTCAAGCCGCTTATCATCTAATACCCTACTTTATCTTCACTCCTCAAGAAGGCTCTAGAAGTGCTTTGTTTGCAGCCACTGACCCGCAGATTCCAGAATACTGTGAAATGTTGAAAGCAGACGAGTGGCCTGTCTCTGCTTTCATCTCTCAGGATTGTAATCCAACAAATCCTTCAGAAGAAGCCCACAACATTGAAACTTCTTACAGAGTGTGGGAGAAGACATTGGAGCTGATTGGTCTTCCTCTTGATTCTGTGGAGAGGCTTATAGAAGGAGAAGAAGTTAAATGCCGATACGGGGGTCAGGCGGAGGAGTAG 1116 0.4677 MGKTTSSSGGKQGLGWMEWLRGWLYVIYEMLFQRISASHLQNPLPLPPLHDLTCIITGSTSGIGLQIARQLAEAGAHVVMAVRNSKAANDLIQKWQSEWSGKGLPLNIEVMELDLLSLDSVARFCEAWNARSAPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLLPSLIRGSPSRIVNVNSVMHYIGFVDTEDMNVVSGKRKYTSLVGYSSSKLAQVQFSSVLHKRLPAEAGVSVVCVSPGVVQTNVARDLPRIVQAAYHLIPYFIFTPQEGSRSALFAATDPQIPEYCEMLKADEWPVSAFISQDCNPTNPSEEAHNIETSYRVWEKTLELIGLPLDSVERLIEGEEVKCRYGGQAEE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0044 371 PRINTS Glucose/ribitol dehydrogenase family signature 53 70 IPR002347 -
Vvi17g0044 371 PRINTS Glucose/ribitol dehydrogenase family signature 133 144 IPR002347 -
Vvi17g0044 371 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Vvi17g0044 371 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Vvi17g0044 371 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Vvi17g0044 371 Gene3D - 42 349 - -
Vvi17g0044 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Vvi17g0044 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Vvi17g0044 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 IPR002347 -
Vvi17g0044 371 Pfam short chain dehydrogenase 54 195 IPR002347 -
Vvi17g0044 371 Pfam short chain dehydrogenase 209 262 IPR002347 -
Vvi17g0044 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 298 IPR036291 -
Vvi17g0044 371 PANTHER RETINOL DEHYDROGENASE 33 345 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0044 45 201 Acyl Lipid Metabolism Gene Families AT3G55290 29.448 1.37e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0044 - - vvi:100254267 696.427