Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0390 ATGTGCACAAGAGAGAGACATGAGAAATGGATGGAAGAATATGGAAAAGTGTATAAGGATGGTGAAGAGAAAGAAAGAAGGTTCCGAATATTCAAGAACAATGTTGAGTTCATTGAGTCCTTCAATGCGGCTGGGGACAAAAGTTTCAAGCTTAGTGTTAACAGATTTGCGGACCTAAGCGTTGAAGAGTTCAAGGCTTCTCTTAATGGCCTTCCCAAGAGTCATTGGCTGGGGACGACCATGGAATCCAAAACGACGCCGTTTCGGCATGAGAATGTAACTGACATTCCAGAAACTGTGGACTGGAGGAAAAGAGGAGTTGTTACACCAATCAAGGACCAAGGCGGATGTTATAGTTGTTGGGCATTTTCAACTGTGGCCTCAATTGAAGGTATTCACAAAATAACTACAGGTAAATTGGTGTCTCTCTCAGAGCAAGAACTAGTAGATTGTGTCAGAGGCGACACAACAGGATGCAAAGGTGGTTATATGGAAGACGCATTTAGATTCATTGTAAAGAAAGGAGGAATAACGAGTGAGTCAAACTACCCTTACAAAGGAGTTGATAAGACTTGTAAGGCAAATGAGAAGGAAACAAGAAAACACAATGTAGCTAAGATTAAAGGGTTCGAGAAGGTTCCTTCCAATAACGAAAAGGCTCTTCTCAAAGCTGTGGCAAAACAACCAGTGTCGGTTTATGTTCAAGCTGGTGGGGATGATTTTCAATTTTATTCCAGTGGTATTTTTACTGGGAAGTGTGGAATTGAGCCAGATCATGCCGTTACGGTAGTTGGTTATGGTAAAGCTAAGGATGGTACTAAGTATTGGATAATAAAAAATTCATGGGGTACTGATTGGGGAGAGAAAGGGTACATGAGGATAGAGAGAGATATTCATGCCAAAGAAGGGTTATGCGGAATTGCCAACAATCCCTCGTATCCAATTATTTAA 951 0.4122 MCTRERHEKWMEEYGKVYKDGEEKERRFRIFKNNVEFIESFNAAGDKSFKLSVNRFADLSVEEFKASLNGLPKSHWLGTTMESKTTPFRHENVTDIPETVDWRKRGVVTPIKDQGGCYSCWAFSTVASIEGIHKITTGKLVSLSEQELVDCVRGDTTGCKGGYMEDAFRFIVKKGGITSESNYPYKGVDKTCKANEKETRKHNVAKIKGFEKVPSNNEKALLKAVAKQPVSVYVQAGGDDFQFYSSGIFTGKCGIEPDHAVTVVGYGKAKDGTKYWIIKNSWGTDWGEKGYMRIERDIHAKEGLCGIANNPSYPII* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0390 316 CDD Peptidase_C1A 97 314 IPR039417 -
Amo03g0390 316 Pfam Papain family cysteine protease 96 315 IPR000668 GO:0006508|GO:0008234
Amo03g0390 316 PRINTS Papain cysteine protease (C1) family signature 114 129 IPR000668 GO:0006508|GO:0008234
Amo03g0390 316 PRINTS Papain cysteine protease (C1) family signature 259 269 IPR000668 GO:0006508|GO:0008234
Amo03g0390 316 PRINTS Papain cysteine protease (C1) family signature 275 281 IPR000668 GO:0006508|GO:0008234
Amo03g0390 316 PANTHER SENESCENCE-ASSOCIATED GENE 12 2 315 - -
Amo03g0390 316 SUPERFAMILY Cysteine proteinases 4 315 IPR038765 -
Amo03g0390 316 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 275 294 IPR025661 -
Amo03g0390 316 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 2 315 - -
Amo03g0390 316 SMART pept_c1 96 315 IPR000668 GO:0006508|GO:0008234
Amo03g0390 316 Gene3D Cysteine proteinases 1 316 - -
Amo03g0390 316 SMART Inhibitor_I29_2 7 64 IPR013201 -
Amo03g0390 316 Pfam Cathepsin propeptide inhibitor domain (I29) 7 64 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0390 Amo-Chr3 7265208 7267021 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0390 - - gmx:113001896 459.914