Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0961 ATGAGATCATTTAGCCAAAACCATTGTATTTTTGTTTTGCTCCTCCTTCTTACTATATGGTCATCCCACGTAATGTCTCGCAGGCTCCTTCAGGAGTGCACATCTGAGAGACATGAGAAGTGGATGGCACAATATGGTAAGGTATACAAAGATGCTACTGAGAAGGAAAAACGTTTCCAAATATTCAAAAAAAATGTTCAATTCATTGAGTCATTCAATGCTGCTGGGAACAAATCTTTCAACCTTAGCATTAACAAATTTGCTGACCTTCATAATGAAGAATTTAAGGCTTTGCTAAATGGTCAGAAGAAGGTACATAGGTTGGAAACATCATCAGGAAAATCATTTAAGTATGACAGTGTAACTGCCATTCCTGCTACCATGGACTGGAGAAAAAGAGGTGCTGTTACTCCAATCAAGGACCAAGGCATTTGTGGTAGTTGTTGGGCATTTGCAACTGTAGGTGCGATAGAGGGTATCCACCAAATAACTAGTGGTGAATTAATTTCCCTCTCGGAGCAAGAACTGGTGGATTGTGTTATCGGTGATAGTAATGGATGCAATGGTGGTTACATGGAAGATGGCTTTAATTTTATCACGAAAAAAGGAGGAATAACAAGTGAAGATTACTATCCCTACAAAGGAGCCAATAAGCATTGTAAGGTTAAGAAGGAAAGTGAAATTGTTGCTGAGATGAAAGGGTACGAAGAAGTGCCAACTAATAATGAAAAGGCACTCCTAAAAGCTGTGGCAAATCAACCGGTGGCAGTTTCTATTGAAGCTGGAGAATCTGCTTTTCAATTTTATTCAAGTGGTATTTTTACTGGAAAATGTGGAACTGATCTAGACCATGCTGTTACCATTGTTGGCTATGGGAAATCAAGTGATGGTAGAAAATATTGGATTGTGAAAAATTCATGGGGCACTGGATGGGGTGAGAAAGGGTATATAAGAATGGAGCGAGATATAGCTGCCAAGGAAGGTTTATGTGGAATTGCAATGAATGCCGCTTATCCCATTGCTTGA 1026 0.3938 MRSFSQNHCIFVLLLLLTIWSSHVMSRRLLQECTSERHEKWMAQYGKVYKDATEKEKRFQIFKKNVQFIESFNAAGNKSFNLSINKFADLHNEEFKALLNGQKKVHRLETSSGKSFKYDSVTAIPATMDWRKRGAVTPIKDQGICGSCWAFATVGAIEGIHQITSGELISLSEQELVDCVIGDSNGCNGGYMEDGFNFITKKGGITSEDYYPYKGANKHCKVKKESEIVAEMKGYEEVPTNNEKALLKAVANQPVAVSIEAGESAFQFYSSGIFTGKCGTDLDHAVTIVGYGKSSDGRKYWIVKNSWGTGWGEKGYIRMERDIAAKEGLCGIAMNAAYPIA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0961 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Apr3g0961 341 SMART pept_c1 124 340 IPR000668 GO:0006508|GO:0008234
Apr3g0961 341 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 340 - -
Apr3g0961 341 Pfam Papain family cysteine protease 124 340 IPR000668 GO:0006508|GO:0008234
Apr3g0961 341 SMART Inhibitor_I29_2 38 95 IPR013201 -
Apr3g0961 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 142 153 IPR000169 -
Apr3g0961 341 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
Apr3g0961 341 PRINTS Papain cysteine protease (C1) family signature 142 157 IPR000668 GO:0006508|GO:0008234
Apr3g0961 341 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Apr3g0961 341 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Apr3g0961 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Apr3g0961 341 PANTHER SENESCENCE-ASSOCIATED GENE 12 25 340 - -
Apr3g0961 341 CDD Peptidase_C1A 125 339 IPR039417 -
Apr3g0961 341 Gene3D Cysteine proteinases 25 341 - -
Apr3g0961 341 SUPERFAMILY Cysteine proteinases 34 340 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0961 Apr-Chr3 24517956 24519309 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0961 - - gmx:100814159 533.872