Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01247 ATGGCTTCAATTGATGCTCAGTTGCGGTTGCTGGCACCAAGTAAGGTTTCTGATGATGACAAGCTTGTTGAGTACGATGCTTTGTTGCTGGACCGCTTCCTTGACATTCTTCAGGATTTGCATGGCAGTGATATTAGAGAAACTCTGCTTGCCCCTGCAGTTACTTTTGAACTGCCAGTGATTCTCTTGATCCGGGGTATGTATGCCCTGTGGAATGGGTGGTTTGAACTATGTTTGGTTCAAGATTGTTATGAACTGTCTGCTGAGTATGAAAGGCAGAATAACCCTCAGAAGTTGGAGGAACTTGGGAACATGCTAACTGGTCTTGACGCTGGGGATTCTATTGTGATTTCTAAGTCGTTTGCTCATATGCTTAATTTGGCCAACTTGGCTGAAGAAGTTCAAATTGCCTACCGTAGAAGGATTAAGTTATTGAAGAAGGGTGATTTTGCTGACGAGAATTCTGCTATCACCGAGTCAGATATTGAAGAGACCTTCAAGAGGCTTGTGAATCAACTGAAGAAGACCCCACAAGAAATCTTTGATGCTTTGAAGAGCCAAACTGTAGATTTGGTCCTAACTGCTCATCCTACTCAGTCTGTTCGTAGATCTTTGTTGCAAAAGCATGGCAGGATTAGGGATTGTTTGACCCAATTGTATGCAAAAGACATAACACCAGATGATAAGCAGGAGCTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGTACAGATGAAATTCGCAGGACCCCTCCTACACCTCAAGATGAGATGAGAGCAGGAATGAGCTACTTTCACGAGACCCTCTGGAAAGGCATACCAAAATTTTTGCGCCGCATTGACACAGCTCTGAAGAACATTGGCATAAATGAACGTGTTCCACATAATGCCCCTGTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAATCCCCGGGTAACTCCAGAAGTTACAAGGGATGTGTGTTTGCTAGCTAGAATGATGGCTGCTAATTTGTACTTCTCTCAGATTGAGGATCTCATGTTTGAGTTGTCAATGTGGCGCTGCAATGATGAGCTACGTCTTCGTTCTGATGAACTCCTTACCTCCTCAAGGAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGATTCCTCCAAGTGAGCCATATCGTGTTATCCTCAGTGATGTAAGGGACAAATTATATAATACACGGGAACGTGCTCGGCAGTTGTTAGCCAATGGAAGTTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTCGAACAGTTCCTGGAGCCTCTTGAACTGTGTTACAGATCGCTGTGTGCATGTGGTGACCAACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGCGCCAAGTTTCCACATTTGGGCTTTCACTTGTAAGACTTGATATCCGTCAAGAATCTGATCGGCACACTGATGTCATGGATGCTATTACAAAGCACTTGGAGATTGGATCTTATCGAGGATGGTCCGAGGAACGCAGGCAGGAATGGTTGCTATCTGAGCTCAGTGGAAAGCGCCCTCTCTTTGGCCCCGATCTTCCTAAAACAGATGAAATTGCTGATGTATTGGAAACCTTCCATGTCATTGCTGAACTTCCTTCAGACAGCTTTGGTGCTTATATCATCTCAATGGCAACAGCTCCATCTGATGTGCTTGCTGTAGAACTTTTACAACGTGAATGTCATGTGAAGCAACCATTAAGGGTTGTGCCATTGTTTGAAAAACTTGCTGATCTTGAGGCTGCTCCTGCTGCAGTAGCCCGCTTATTCTCTATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATAGGGTACTCAGACTCAGGAAAAGATGCTGGCCGTCTGTCTGCAGCATGGGCACTGTACAAGGCTCAAGAGGAACTCATAAAGGTTGCAAAAGACTTAGGTATTAAGCTTACAATGTTCCATGGCAGAGGAGGAACTGTGGGAAGAGGAGGAGGTCCCACTCATCTTGCTATATTATCTCAGCCACCAGATACTATTCATGGCTCACTTCGGGTAACAGTGCAGGGTGAAGTTATTGAACAATCATTTGGAGAGGAGCACTTGTGCTTCAGAACACTTCAGCGTTTCACTGCTGCTACACTTGAGCATGGAATGCACCCTCCTGTGGCACCAAAACCAGAATGGCGTGCCCTCATGGATGAGATGGCAGTCATTGCTACAGAGGAGTATCGCTCTGTTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTGCAACACCCGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAAAGAAAGCCAAGCGGAGGAATTGAATCACTCCGGGCAATCCCTTGGATCTTTGCTTGGACTCAGACAAGGTTCCATCTGCCTGTATGGCTTGGTTTCGGGGCAGCATTTAGGCATGTAGTTAAGAAGGATCCAAAGAATCTGCAAATGCTTCAAGATATGTATAATCAATGGCCTTTCTTCAGGGTCACCCTTGACTTAGTTGAGATGGTGTTTGCCAAGGGAGACCCCGGAATTGCAGCCCTTTATGATAAACTCCTAGTGACAGAGGAACTGTGGGCATTTGGTGAGCGATTAAGGTCCATGTATGAAGAAACCAAGAGCCTTCTCCTTCAGGTTGCTGGGCACAGAGATCTCCTTGAAGGAGATCCCTACTTGAAGCAAAGACTTCGTCTTCGTGATTCATACACCACAACCCTTAATGTCCTGCAAGCCTACACATTGAAGCGAATCCGTGATCCTGACTACCATGTGAACTTGAAGCCACACTTGTCCAAAGACTACATCGAGTCAAGCAACCCAGCTGCTGAGCTTGTGAAACTCAACCCTACTAGTGAATATGCTCCCGGTCTGGAAGATACCCTTATTTTAACAATGAAGGGTATAGCTGCTGGCATGCAGAACACTGGTTAA 2970 0.4512 MASIDAQLRLLAPSKVSDDDKLVEYDALLLDRFLDILQDLHGSDIRETLLAPAVTFELPVILLIRGMYALWNGWFELCLVQDCYELSAEYERQNNPQKLEELGNMLTGLDAGDSIVISKSFAHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKRLVNQLKKTPQEIFDALKSQTVDLVLTAHPTQSVRRSLLQKHGRIRDCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETLWKGIPKFLRRIDTALKNIGINERVPHNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRLRSDELLTSSRRDAKHYIEFWKQIPPSEPYRVILSDVRDKLYNTRERARQLLANGSSEIPEETTFTNVEQFLEPLELCYRSLCACGDQPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYRGWSEERRQEWLLSELSGKRPLFGPDLPKTDEIADVLETFHVIAELPSDSFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELIKVAKDLGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVAPKPEWRALMDEMAVIATEEYRSVVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFRHVVKKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIAALYDKLLVTEELWAFGERLRSMYEETKSLLLQVAGHRDLLEGDPYLKQRLRLRDSYTTTLNVLQAYTLKRIRDPDYHVNLKPHLSKDYIESSNPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01247 989 FunFam Phosphoenolpyruvate carboxylase 1 332 467 - -
Vimu5g01247 989 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 615 627 IPR033129 -
Vimu5g01247 989 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 79 989 IPR015813 GO:0003824
Vimu5g01247 989 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 192 203 IPR018129 -
Vimu5g01247 989 PRINTS Phosphoenolpyruvate carboxylase signature 655 684 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 PRINTS Phosphoenolpyruvate carboxylase signature 464 484 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 PRINTS Phosphoenolpyruvate carboxylase signature 244 260 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 PRINTS Phosphoenolpyruvate carboxylase signature 304 319 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 PRINTS Phosphoenolpyruvate carboxylase signature 191 204 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 PRINTS Phosphoenolpyruvate carboxylase signature 613 633 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 PRINTS Phosphoenolpyruvate carboxylase signature 787 813 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 Hamap Phosphoenolpyruvate carboxylase [ppc]. 15 989 IPR022805 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 17 989 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vimu5g01247 989 Gene3D Phosphoenolpyruvate/pyruvate domain 332 467 - -
Vimu5g01247 989 Pfam Phosphoenolpyruvate carboxylase 79 989 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01247 Vimu-Chr5 22274547 22280508 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01247 K01595 - gmx:100807407 1830.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01247 5 22274547 22280508 Vimu5g01247 5 22274547 22280508 ECH
Vimu4g01160 4 10218281 10223247 Vimu5g01247 5 22274547 22280508 PCT