Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2073 ATGACAACTACAACATTAAGTTATGCTATATTCAGTCTTCTTATATTGTGCAATGCATGGATAAGTGCAAGTAAATGTCCTCCAACGCACAAGTATAATTCATCCAACCTAGAAGTCATGAGGGTGAGGTTTGAAAGATGGCTTAAACAATATGGTCGAAATTACAAAGATAAAGAAGAATGGGAAGTCCGTTTTGGCATTTACCAGGCAAATCTCAAGTTCATAGAGTGCAAAAACTCTCAAAAGAACTCATACAATCTCACGGACAACAAATTTGCAGATCTTACTAATGAAGAGTTTATGAGTACTTATCTGGGTTTTGGAACTAGGTTGCTTCCATATACAGGATTCAGGTATCATGAACATGGGGATCTTCCAGAAAGCAAGGATTGGAGGGAGGAAGGAGCAGTAACTGACATCAAGGATCAAGGCGATTGTGGAAGTTGTTGGGCGTTCTCTGCAGTGGCTGCTGTGGAAGgcatcaacaaaataaaatcaggGAAGTTGGTGTCTCTCTCTGAACAAGAACTCATAGACTGTGATGTTGAAAATGGAAACCAAGGCTGTGGAGAAGAATGGTGGTCTAACCACTGCAAAAGACTACCCTATGAAGGGGTAGATGGCACATGTAACAAGGAAAAAGCTGGACATCATGCAGTCAATATAAGTGGCTATGAAAAAGTACCTGCTAATAATGAGGCTATGCTTAAAGCTGCAGCTGCTAATCAACCTGTCTCTGTGGCAATTGATGCTGGAGGTTATGCATTTCAGCTATATTCAGAAGGTGTTTTCTCTGGCATTTGTGGAAAGCAACTCAATCATGGTGTGACCATAGTTGGGTACGGATCAGAAGTAATTGGTGATAAGTATTGGATTGTGAAGAATTCATGGGGTGCTGACTGGGGTGAATCTGGTTATATTAGGATGCAACGTGATACTTTTGATGAAGCTGGTACTTGTGGCATTGCCATGCAAGCCAGTTACCCCCTTAAGAATTAA 999 0.4024 MTTTTLSYAIFSLLILCNAWISASKCPPTHKYNSSNLEVMRVRFERWLKQYGRNYKDKEEWEVRFGIYQANLKFIECKNSQKNSYNLTDNKFADLTNEEFMSTYLGFGTRLLPYTGFRYHEHGDLPESKDWREEGAVTDIKDQGDCGSCWAFSAVAAVEGINKIKSGKLVSLSEQELIDCDVENGNQGCGEEWWSNHCKRLPYEGVDGTCNKEKAGHHAVNISGYEKVPANNEAMLKAAAANQPVSVAIDAGGYAFQLYSEGVFSGICGKQLNHGVTIVGYGSEVIGDKYWIVKNSWGADWGESGYIRMQRDTFDEAGTCGIAMQASYPLKN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2073 332 SMART Inhibitor_I29_2 44 100 IPR013201 -
Ssu3g2073 332 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Ssu3g2073 332 PRINTS Papain cysteine protease (C1) family signature 274 284 IPR000668 GO:0006508|GO:0008234
Ssu3g2073 332 PRINTS Papain cysteine protease (C1) family signature 290 296 IPR000668 GO:0006508|GO:0008234
Ssu3g2073 332 CDD Peptidase_C1A 126 329 IPR039417 -
Ssu3g2073 332 SMART pept_c1 125 330 IPR000668 GO:0006508|GO:0008234
Ssu3g2073 332 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Ssu3g2073 332 Pfam Papain family cysteine protease 125 329 IPR000668 GO:0006508|GO:0008234
Ssu3g2073 332 Gene3D Cysteine proteinases 29 332 - -
Ssu3g2073 332 PANTHER ERVATAMIN-B-LIKE 25 331 - -
Ssu3g2073 332 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 331 - -
Ssu3g2073 332 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 290 309 IPR025661 -
Ssu3g2073 332 Pfam Cathepsin propeptide inhibitor domain (I29) 44 100 IPR013201 -
Ssu3g2073 332 SUPERFAMILY Cysteine proteinases 40 330 IPR038765 -
Ssu3g2073 332 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 272 282 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2073 Ssu-Chr3 68356445 68357818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2073 - - gmx:121173133 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2073 3 68356445 68357818 Ssu3g2073 3 68356445 68357818 ECH