Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00876 ATGGCTGCAAAAAATCATATCTATCATATTTCACTGGCATTCCTTTTCTGCATGGTATTCTGGGTTTTCCAAGTCACATGTCGCTCTCTTCCAGATGCCTCCATGTATGAGAGGCATGAACAATGGATGATTCGTTATGGCAGAGTGTATAAGGACCCTCAGGAAAGGGAAAAGCGTTTCAGGATATTCAAGGAAAATGTGAATTTCATTGAAGCCTTCAACGCTGCTGCCAATAAACCTTACGAGCTAGGCATTAATAAATTTGCAGACCTCACCAACGAGGAGTTCATAGCATCCAGAAATAGGTTCAAGGGGCATATGTGTTCCTCAATCATAAGGACAACCACTTTCAAGTATGAAAATGTGACTGCAATCCCATCCACAGTGGATTGGAGGCAAAAGGGTGCAGTGACACCCGTGAAGGACCAAGGTCAATGTGGTAAGCAAATGCTTCATTCTTCACTGACATTTCCATGTCATATTAAACCGAATTATTATCTAATATTAATTTATCTTGTAGGATGTTGTTGGGCATTTTCCGCGGTTGCAGCAACTGAAGGAATTCATGCACTGACTTCTGGAAAGTTGATCTCTTTGTCAGAACAAGAACTTGTTGATTGTGACACAAAGGGTGTAGACCAAGGTTGTGAAGGTGGTCTTATGGATGATGCTTTCAAATTCATCATCCAAAATCATGGACTCGACACTGAAGCCAATTACCCGTATAAGGGTGTTGATGGAAAATGCAATGCAAAGGCAGAAGCCATCCATGCTGCTACCATTACTGGCTACGAAGATGTTCCTGCTAACAATGAGAAGGCCCTTCAGAAAGCTGTTGCAAATCAACCAGTTTCAGTAGCCATTGATGCCAGTGGTTCTGCTTTTCAGTTTTACAAGAGTGGTGTTTTCAGCGGTGCATGTGGAACTGAGTTAGATCACGGTGTCACTGCAGTGGGTTATGGTGTTAGCAACAATGGGACTCAGTATTGGCTGGTAAAGAACTCATGGGGAACAGAGTGGGGTGAAGAAGGGTACATTAGGATGCAAAGGGGTGTAGATGCAAAGGAAGGACTGTGTGGCATAGCCATGCTAGCATCTTACCCTACTGCATAA 1113 0.4313 MAAKNHIYHISLAFLFCMVFWVFQVTCRSLPDASMYERHEQWMIRYGRVYKDPQEREKRFRIFKENVNFIEAFNAAANKPYELGINKFADLTNEEFIASRNRFKGHMCSSIIRTTTFKYENVTAIPSTVDWRQKGAVTPVKDQGQCGKQMLHSSLTFPCHIKPNYYLILIYLVGCCWAFSAVAATEGIHALTSGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLDTEANYPYKGVDGKCNAKAEAIHAATITGYEDVPANNEKALQKAVANQPVSVAIDASGSAFQFYKSGVFSGACGTELDHGVTAVGYGVSNNGTQYWLVKNSWGTEWGEEGYIRMQRGVDAKEGLCGIAMLASYPTA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00876 370 PRINTS Papain cysteine protease (C1) family signature 170 185 IPR000668 GO:0006508|GO:0008234
Spst11g00876 370 PRINTS Papain cysteine protease (C1) family signature 313 323 IPR000668 GO:0006508|GO:0008234
Spst11g00876 370 PRINTS Papain cysteine protease (C1) family signature 329 335 IPR000668 GO:0006508|GO:0008234
Spst11g00876 370 SUPERFAMILY Cysteine proteinases 31 369 IPR038765 -
Spst11g00876 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 329 348 IPR025661 -
Spst11g00876 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 311 321 IPR025660 -
Spst11g00876 370 Gene3D Cysteine proteinases 24 370 - -
Spst11g00876 370 SMART Inhibitor_I29_2 39 96 IPR013201 -
Spst11g00876 370 FunFam Papain 171 370 - -
Spst11g00876 370 SMART pept_c1 125 369 IPR000668 GO:0006508|GO:0008234
Spst11g00876 370 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Spst11g00876 370 CDD Peptidase_C1A 126 368 IPR039417 -
Spst11g00876 370 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 363 IPR013128 GO:0008234
Spst11g00876 370 Pfam Papain family cysteine protease 125 148 IPR000668 GO:0006508|GO:0008234
Spst11g00876 370 Pfam Papain family cysteine protease 174 368 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00876 Spst-Chr11 32796956 32798068 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00876 - - gmx:100777471 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00876 11 32796956 32798068 Spst11g00876 11 32796956 32798068 ECH