Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1036 ATGGTTGCCAAAAATCATTTCTGTCATATTTCATTGGCAATGCTTCTCTGCATGGCTTTCTTGGCTTTTCAAGTCACATGTCGCAGTCTCCAAGATGCATCCATGTATGAGAGGCATGAGCAATGGATGACTCGTTACGGCAAGGTGTATAAGGACCCTCAGGAACGGGAAAAGCGTTTCAGGATATTTAAGGAAAATGTGAATTACATTGAAGCTTTCAACAACGCTGCCAATAAACGTTACAAGCTAGCCATTAATCAATTTGCAGACCTCACTAACGAAGAGTTCATTGCACCCAGAAATAGATTCAAGGGGCATATGTGTTCCTCAATCATTAGGACAACCACTTTTAAGTATGAAAATGTGACAGCAGTACCATCCACAGTGGATTGGAGGCAAAAAGGAGCAGTTACACCCATCAAGGACCAAGGTCAATGTGGATGTTGTTGGGCATTTTCTGCTGTTGCAGCAACTGAAGGAATTCATGCACTGACTTCTGGAAAATTGATATCTTTGTCGGAACAAGAACTTGTTGATTGTGACACAAAGGGTGTGGACCAAGGTTGTGAAGGTGGTCTTATGGATGATGCTTTTAAATTCGTCATCCAAAATCATGGACTCAATACCGAAGCCAACTACCCCTATAAGGGTGTTGATGGAAAGTGCAATGTAAATGAAGCAGCCAACGATGCTGCTACTATTACTGGGTATGAGGATGTCCCTGCCAACAATGAGAAGGCACTGCAAAAAGCTGTGGCCAATCAACCAGTTTCCGTAGCCATTGATGCCAGTGGCTCTGACTTTCAATTTTACAAGAGTGGTGTCTTCACTGGTTCATGTGGAACTGAGTTGGATCACGGAGTCACTGCTGTGGGATATGGTGTTAGTAATGATGGGACTGAATATTGGTTGGTTAAGAACTCATGGGGAACCGAGTGGGGTGAAGAAGGTTACATTAGGATGCAAAGGGGAGTGAATTCTGAGGAAGGACTCTGTGGCATAGCTATGCAAGCATCTTACCCTACTGCATAA 1032 0.4351 MVAKNHFCHISLAMLLCMAFLAFQVTCRSLQDASMYERHEQWMTRYGKVYKDPQEREKRFRIFKENVNYIEAFNNAANKRYKLAINQFADLTNEEFIAPRNRFKGHMCSSIIRTTTFKYENVTAVPSTVDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGIHALTSGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFVIQNHGLNTEANYPYKGVDGKCNVNEAANDAATITGYEDVPANNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSNDGTEYWLVKNSWGTEWGEEGYIRMQRGVNSEEGLCGIAMQASYPTA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1036 343 SUPERFAMILY Cysteine proteinases 31 342 IPR038765 -
Gso12g1036 343 CDD Peptidase_C1A 126 341 IPR039417 -
Gso12g1036 343 SMART Inhibitor_I29_2 39 96 IPR013201 -
Gso12g1036 343 Pfam Papain family cysteine protease 125 342 IPR000668 GO:0006508|GO:0008234
Gso12g1036 343 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Gso12g1036 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Gso12g1036 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Gso12g1036 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Gso12g1036 343 PANTHER - 23 342 - -
Gso12g1036 343 Coils Coil 74 94 - -
Gso12g1036 343 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 342 - -
Gso12g1036 343 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Gso12g1036 343 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Gso12g1036 343 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Gso12g1036 343 Gene3D Cysteine proteinases 21 343 - -
Gso12g1036 343 SMART pept_c1 125 342 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1036 Gso-Chr12 13597417 13598744 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1036 - K16292 gmx:100800823 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1036 12 13597417 13598744 Gso12g1036 12 13597417 13598744 ECH