Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g2086 . . . . . Adu03g01041 . . . . Ahy13g1270 . Aip03g01389 . . . Amo13g1639 . . . . Arst3g01339 . . . . . Bva09g01870 . . . . . . . . . . . . Gma10g01727 . . . Gso10g1611 . . . . . . . . . . . . . . . . . . Lasa7g00882 . . . . . . . . . . Mal7g1114 . . . . . . . Mtr4g1028 . . . . . . . . . . Pste1g00199 . . . . . Pumo11g02292 . Pvu11g0041 . Rops3g00055 . . . Spst11g00325 . . . . Tpr4g1163 . . . Tsu06g00898 . . Vian5g01869 . . . Vimu5g02842 . Viun11g03019 . Vivi7g04974 . .
Vvi18g2087 . . . . . . . . Aev04g3753 . Ahy13g1269 . Aip03g01388 . . . Amo13g1638 . . . . . . . . . . Bva09g01869 . . . . . . Dod03g2482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa5g2529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2091 . . . Accr1g02170 . Adu03g01008 . . . . . . . . . . . . . . . Arst3g01295 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu11g01096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g00305 . . . . . Pumo11g02258 . Pvu11g0072 . Rops3g00096 . Seca6g00138 . Spst2g02953 . . . . . . . . . . . Vian5g01838 . . . Vimu5g02805 . Viun11g02984 . . . .
Vvi18g2092 . . . . . . . . . . Ahy13g1248 . Aip03g01366 . . . Amo13g1622 . . . . . . . . . Bva07g00236 Bva09g01866 . . . . . . Dod03g2504 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g1119 . . . . . . . Mtr4g1029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g1164 . . . Tsu06g00899 . . . . . . . . . . . . .
Vvi18g2093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2094 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g00269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g2095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Ahy Ahy13g1248 Chr13 14522346 14523230 -
Aip Aip03g01366 Chr03 14027288 14031825 -
Amo Amo13g1622 Chr13 22041745 22042949 -
Dod Dod03g2504 Chr03 56572346 56572904 +
Vvi Vvi18g2086 Chr18 28932158 28939425 +
Adu Adu03g01041 Chr03 10901093 10903894 -
Ahy Ahy13g1270 Chr13 14938890 14942222 -
Aip Aip03g01389 Chr03 14413114 14416325 -
Amo Amo13g1639 Chr13 22406793 22410769 -
Arst Arst3g01339 Chr3 11331247 11334509 -
Bva Bva09g01870 Chr09 13536121 13539573 -
Gma Gma10g01727 Chr10 44434830 44437659 +
Gso Gso10g1611 Chr10 42631447 42634333 +
Lasa Lasa7g00882 Chr7 90022979 90025764 +
Mal Mal7g1114 Chr7 33097199 33100042 +
Mtr Mtr4g1028 Chr4 13010353 13013636 +
Pste Pste1g00199 Chr1 725683 728542 -
Pumo Pumo11g02292 Chr11 55514064 55517476 +
Pvu Pvu11g0041 Chr11 301032 304323 -
Rops Rops3g00055 Chr3 765805 769115 +
Spst Spst11g00325 Chr11 11219179 11222010 -
Tpr Tpr4g1163 Chr4 11124745 11128418 -
Tsu Tsu06g00898 Chr06 8053987 8057256 -
Vian Vian5g01869 Chr5 40756726 40759542 +
Vimu Vimu5g02842 Chr5 37661880 37664871 +
Viun Viun11g03019 Chr11 41397493 41400667 +
Vivi Vivi7g04974 Chr7 132128204 132131384 +
Vvi Vvi18g2087 Chr18 28939712 28948349 -
Aev Aev04g3753 Chr04 34784400 34787214 +
Ahy Ahy13g1269 Chr13 14934847 14941840 +
Aip Aip03g01388 Chr03 14409133 14413159 +
Amo Amo13g1638 Chr13 22405272 22408317 +
Bva Bva09g01869 Chr09 13532109 13535882 +
Dod Dod03g2482 Chr03 56371142 56374671 -
Vvi Vvi18g2088 Chr18 28949936 28951701 -
Psa Psa5g2529 Chr5 192389929 192393162 -
Vvi Vvi18g2089 Chr18 28984713 28986077 +
Vvi Vvi18g2090 Chr18 28988813 28989125 +
Vvi Vvi18g2091 Chr18 28993805 29013990 +
Accr Accr1g02170 Chr1 56145715 56153777 -
Adu Adu03g01008 Chr03 10382552 10388824 -
Arst Arst3g01295 Chr3 10812828 10820877 -
Lapu Lapu11g01096 Chr11 13107888 13117275 -
Pste Pste1g00305 Chr1 1081432 1097458 +
Pumo Pumo11g02258 Chr11 55162034 55170958 -
Pvu Pvu11g0072 Chr11 504990 516543 +
Rops Rops3g00096 Chr3 1139600 1152223 +
Seca Seca6g00138 Chr6 3551549 3560939 +
Spst Spst2g02953 Chr2 29304230 29310410 -
Vian Vian5g01838 Chr5 40559285 40566373 -
Vimu Vimu5g02805 Chr5 37477182 37484966 -
Viun Viun11g02984 Chr11 41211046 41219516 -
Vvi Vvi18g2092 Chr18 29018757 29021753 +
Ahy Ahy13g1248 Chr13 14522346 14523230 -
Aip Aip03g01366 Chr03 14027288 14031825 -
Amo Amo13g1622 Chr13 22041745 22042949 -
Bva Bva07g00236 Chr07 3573994 3577427 +
Bva Bva09g01866 Chr09 13490992 13494349 -
Dod Dod03g2504 Chr03 56572346 56572904 +
Mal Mal7g1119 Chr7 33403683 33406928 +
Mtr Mtr4g1029 Chr4 13032407 13035866 +
Tpr Tpr4g1164 Chr4 11142990 11146417 +
Tsu Tsu06g00899 Chr06 8069751 8072730 +
Vvi Vvi18g2093 Chr18 29039948 29040765 -
Vvi Vvi18g2094 Chr18 29047256 29049919 -
Bva Bva07g00269 Chr07 3891995 3911421 +
Vvi Vvi18g2095 Chr18 29055947 29058702 -
Gma Gma10g01727 Chr10 44434830 44437659 +
Gso Gso10g1611 Chr10 42631447 42634333 +
Gso Gso10g1611 Chr10 42631447 42634333 +
Gso Gso10g1611 Chr10 42631447 42634333 +