Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02805 ATGTCAAAGAATAAAGATGCTACCAATCTCTCACGCACCTTTAAATACCTATTAGCTACGCAGTTCTTGTCACGAGGGATTCCATTTATATTCAATACATGGATTGTAAGGCATCTCACACAAGAGGACTATGCGCTGTACGCAGTGCAGTTTCATCTGCTAGTCACATGTATATTATTTCTTAGCCGGGAGGGCTTTCGGCGAGCATGCTTGCGAATGGACCTGAAATGTGATGGCAATTCAATGGGAGATGTTGTGAAGCTAATGAAAGTAGTGTGGATGAGTTTCCCACTTGGAATATTTATTACAATTGTAGTATGCCTTTTTGTCTTCTGGTGGCAACAAATAAGTTATTGTAGTCCACATGGGCAAGCTATCTTGATCAATGGTTTTGCATGTATTTTGGAGCTCTTGGCTGAGCCTGCGTACATTCTCTCACAAAGCATGGTTTTACTTGAATTACGGCTGATGGTTGAGACTATAGCCACTCTGTTACGATGCTTGACAATGTATTTTCTAATCAGCAAGCAAACTGGAATTGAAAAATCAATCATATTTGGTTTGTCACAGTCTGCATATGGAGCCAGCTTATTTCTTGGTTATTGGGGCTATCTTTTGCATTCCCAAAAATTGAAGGTTTCGTACCTCTTTCCATTCAGAAAGGGAAAACTGATTGATTTTGACCAGCAGCTGTCCAAGATGTGTATACTGTTTACCTTTCAATCCTTTCGAAAATTGATCCTTCAGGAAGGAGAAAAGATAGTACTTGTATGGTTGGATACACCATATAATCAGGCAGTATACGGCGTGGTGGACAAATTGGGTAGCTTAGTGGTGAGACTTGTCTTTTTACCTTTCGAAGAAAGCTCGTATGCAACATTTGCAAGGTCTGCTTCAGGACAATATCCAGGAAAAAGCAAGAAATTGGGAAATGGCTTGACGGAATCCCTTAAGTTAGTTTTGTTGATTGGCCTTGTTTTTATGGCATTTGGTCCAAGTTATTCTTATTCACTCATTAGATTGCTTTATGGTGAAAAATGGAGTGATGGAGAAGCGTCAACTGCCCTTCGTTGTTATTGCTTTTATGTCATTGTTTTGGCCATGAATGGAACCTCTGAAGCCTTTATGCATGCAGTTGCAACCGAGAGCCAACTCAAGCGATCTAATGATTCACTACTTATATTCTCGTTGATATATATAATTTTGAATGTCCTGTTAATAAGGTTAGCTGGGGCTGTTGGCTTGATAATGGCAAATTCTCTCAATATGACCCTGAGGATTTTATACTCTGCTATATTCATAAAGAAGTACTTCCAGGGATCTTCCTCATTTTCTTTCTATGAATGCTTGCCGTCAGGATGGATTATTCTGTTACTTTCAGGCATAATCACTCTCATTTCTGAGAATGTCTTTTTGGACCGAGATAATTTCTGGCCATCATTCATGGTCCATTTCTCTGTTGGGCTGGGTTGCTTCTGTGTGTCATCATACGTGATCTATTGCCGGGAAAAAACATTCATCAGAAGACTCAGTCGCTTTAATGATCATGTGGACTGA 1557 0.3976 MSKNKDATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLLVTCILFLSREGFRRACLRMDLKCDGNSMGDVVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYCSPHGQAILINGFACILELLAEPAYILSQSMVLLELRLMVETIATLLRCLTMYFLISKQTGIEKSIIFGLSQSAYGASLFLGYWGYLLHSQKLKVSYLFPFRKGKLIDFDQQLSKMCILFTFQSFRKLILQEGEKIVLVWLDTPYNQAVYGVVDKLGSLVVRLVFLPFEESSYATFARSASGQYPGKSKKLGNGLTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLIFSLIYIILNVLLIRLAGAVGLIMANSLNMTLRILYSAIFIKKYFQGSSSFSFYECLPSGWIILLLSGIITLISENVFLDRDNFWPSFMVHFSVGLGCFCVSSYVIYCREKTFIRRLSRFNDHVD 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02805 518 Pfam Rft protein 13 510 IPR007594 GO:0006488|GO:0016020
Vimu5g02805 518 PANTHER ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED 1 513 IPR007594 GO:0006488|GO:0016020
Vimu5g02805 518 CDD MATE_rft1 9 440 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02805 K06316 - gmx:100817452 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02805 5 37477182 37484966 Vimu5g02805 5 37477182 37484966 ECH