Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01388 ATGGAGGGATCAACATCATCACCGGCGTCTTCGTCCCAATCCCTCGCTTTCTACGACTTCCTGGATCGCATGCGAAACCCTGCTTCTCTCGATCTTCTTCGATCAATTAAGAGCTTCATTGTATCATTTTCATTCTATCCATGCAATCCTGAAAGTGATGGGAAAAGAGTGCAAGAGTTCTTCTCAACAACAGAAACTGCAATAAGAGATCATCCATTGTGGATGGGTGCCACTGAAGAAGAGATTGACTGTGCAATGGAGGGTTTGGAGAAATATATAATGACTAAATTGTTCTCCCGGACATTTTCTGCTTTGCCTGAGGATGGAAGGATTGATAATGACATATCAGAGAAAATGTGCTTGCTGCAAACCTTTCTGAAGCCTGAACATCTGGACATACCAGCACTTCTTCGCAATGAAGCTTCATGGCTGCTGGCTGAGAAAGAATTGAGGAAAATCAATGGTTTCAAATCTCCTCGTGAGAAACTATTGTGTATAATGAATTGTTGTAAGGTCATCAACAATCTGCTGCTCAATGCAACAATTTCTGAAAATCATGTGCCAGCTGGGGCTGATGACTTTCTCCCTGTGCTCATATATGTTACAATAAAGGCCAATCCTCCCCAATTACATTCTAACCTGAAATTCATCCAGTTGTACCGATGGCAAGCAAAACTCGTCTCAGAAGCTGCATATTATTTCACAAATCTTGTGTCAGCCATGGCATTTATAGTTGATTTAAATGCTACATCCCTTTCCATGGATGAAGACAAATTTGAGGAAAACATGGAAGCAGCCAAATTGAAGAGCAAATTAAAAAGTGAAGAATATCAGATGATCAAACAAGGGGAGGCCAAGTGCAGTTCATCAGGCAAAATGTGTGACGAAATTGAAGAGACAAGAGGTCAGTTTTCTTATTTCTTGGGTGTTGTTTGA 936 0.4092 MEGSTSSPASSSQSLAFYDFLDRMRNPASLDLLRSIKSFIVSFSFYPCNPESDGKRVQEFFSTTETAIRDHPLWMGATEEEIDCAMEGLEKYIMTKLFSRTFSALPEDGRIDNDISEKMCLLQTFLKPEHLDIPALLRNEASWLLAEKELRKINGFKSPREKLLCIMNCCKVINNLLLNATISENHVPAGADDFLPVLIYVTIKANPPQLHSNLKFIQLYRWQAKLVSEAAYYFTNLVSAMAFIVDLNATSLSMDEDKFEENMEAAKLKSKLKSEEYQMIKQGEAKCSSSGKMCDEIEETRGQFSYFLGVV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01388 311 ProSiteProfiles VPS9 domain profile. 109 253 IPR003123 -
Aip03g01388 311 SUPERFAMILY VPS9 domain 16 264 IPR037191 -
Aip03g01388 311 PANTHER OS03G0842700 PROTEIN 10 287 - -
Aip03g01388 311 Pfam Vacuolar sorting protein 9 (VPS9) domain 145 246 IPR003123 -
Aip03g01388 311 Gene3D - 24 104 - -
Aip03g01388 311 PANTHER RAB GDP/GTP EXCHANGE FACTOR 10 287 IPR045046 GO:0005085|GO:0016192
Aip03g01388 311 SMART vps9_2 142 262 IPR003123 -
Aip03g01388 311 Pfam Domain of unknown function (DUF5601) 34 98 IPR041545 -
Aip03g01388 311 Gene3D VPS9 domain 106 270 IPR037191 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01388 Aip-Chr3 14409133 14413159 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01388 K20131 - jre:109001383 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01388 03 14409133 14413159 Aip03g01388 03 14409133 14413159 ECH