Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2087 ATGGATGCGTCCTCGTCTCAGCCGTTAACGTTCTATGACTTTCTGGACAGAATGCGGAATCCAGCTTCTCTCGATCTGGTTCGGTCCATCAAAAGTTTTATTGTATCTTTTTCATTCTATGCGCCCAGCCCAGAAAATGATGGCAAGAGGCTGCAAGACTTCCTTTTAACAATGGAAGATTCTATAAGGGACCATCCGTTATGGGTTGGGGCAACTGAGGAAGAAATAGACTCTGCAATTGAGGGTTTGGAGAAGTATGTTATGACAAAATTGTTCTCTCGCACATTTGCGGCTTCTCCTGAGGATGCTAAGGCTGACCAGGAAATTTCAGAAAAAATAAGCTTGCTACAAAACTTCTTGAGGCCTGAGCATTTGGATATACCTGCAGTACTTCAGAATGAAGCTTCATGGCTGCTTGCAGAGAAAGAATTGCAGAAAGTCAATGCTTTCAAGGCTCCTCGGGAGAAGCTTCTTTGCATTTTGAATTGCTGCAGGGTCATAAACAATTTGCTGCTTAACGCAGCAATGTCAGAAAATCATATTCTAGCTGGAGCTGATGATTTTCTTCCTGTTCTAATATATGTCACGATCAAGGCGAATCCTCCTCAGCTGCATTCAAACCTCAAATTCATCCAGCTGTATCGGAGGCAGGAGAAGCTTGTGTCAGAAGTGGCTTATTATTTCACAAATCTGGTCTCTGCCAAGTCATTTATTGTTGACCTAGATGCAAAGTCTCTTTCCATGGATGCAGTTGAATTTCAGGAGAGCATGGAAGCAGCAAGAGAGGCCCATAAAGCAGCTGGAGTTAAACCCTCACCATCATTGGATCGAACTGCAACCTTGGCAGGGCAGATGGATCCTGGTCCTTCAAGAAGAATGTGGTTTAGAGAAACTGACACAAGAGGTACGTCAAACTATCCTTTTATGGAAGCAGAGGCTGGTGAACTCACTGTGGGAGATGTAGAGACATTGCTGAGTTTGTACAAGGATGTTGTTACAAAGTACACTAATCTGTGCAGGGCTGTTAAACGCCTTTCTATGTCCAAAACAGAAACCCCAGTTTTGGTTCCCCTTTCAGAAGGGACCCATACCTCTCCACCTCAGCCAGAAGGAAGAACTACAAATGTCAATGACAAAAGAGGAGAATAG 1149 0.4386 MDASSSQPLTFYDFLDRMRNPASLDLVRSIKSFIVSFSFYAPSPENDGKRLQDFLLTMEDSIRDHPLWVGATEEEIDSAIEGLEKYVMTKLFSRTFAASPEDAKADQEISEKISLLQNFLRPEHLDIPAVLQNEASWLLAEKELQKVNAFKAPREKLLCILNCCRVINNLLLNAAMSENHILAGADDFLPVLIYVTIKANPPQLHSNLKFIQLYRRQEKLVSEVAYYFTNLVSAKSFIVDLDAKSLSMDAVEFQESMEAAREAHKAAGVKPSPSLDRTATLAGQMDPGPSRRMWFRETDTRGTSNYPFMEAEAGELTVGDVETLLSLYKDVVTKYTNLCRAVKRLSMSKTETPVLVPLSEGTHTSPPQPEGRTTNVNDKRGE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2087 382 PANTHER RAB GDP/GTP EXCHANGE FACTOR 4 336 IPR045046 GO:0005085|GO:0016192
Vvi18g2087 382 Pfam Vacuolar sorting protein 9 (VPS9) domain 139 241 IPR003123 -
Vvi18g2087 382 ProSiteProfiles VPS9 domain profile. 103 247 IPR003123 -
Vvi18g2087 382 FunFam Vacuolar protein sorting-associated protein 9A 100 266 - -
Vvi18g2087 382 MobiDBLite consensus disorder prediction 353 374 - -
Vvi18g2087 382 Pfam Domain of unknown function (DUF5601) 28 92 IPR041545 -
Vvi18g2087 382 MobiDBLite consensus disorder prediction 264 294 - -
Vvi18g2087 382 SUPERFAMILY VPS9 domain 9 257 IPR037191 -
Vvi18g2087 382 MobiDBLite consensus disorder prediction 353 382 - -
Vvi18g2087 382 Gene3D VPS9 domain 100 265 IPR037191 -
Vvi18g2087 382 Gene3D - 18 98 - -
Vvi18g2087 382 SMART vps9_2 136 256 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2087 Vvi-Chr18 28939712 28948349 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2087 K20131 - vvi:100251775 754.977