Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1638 ATGTACTTTCAGGCCAATCCTCCCCAATTACATTCTAACCTGAAATTCATCCAGTTGTACCGATGGCAAGCAAAACTCGTCTCAGAAGCTGCATATTATTTCACAAATCTTGTGTCAGCCATGGCATTTATAGTTGARTTAAATGCTACATCCCTTTCCATGGATGAYGACAAATTTGAGGAAAACATGGAAGCAGCCAAATTGAAGAGCAAATTAAAAAGTGAAGAATATCAGATGATCAAACAAGGGGAGGCCAAGTGCAGTTCATCAGGCAAAATGTGTGACGAAATTGAAGAGACAAGAGTTATGTCGCTTGAATCAAATTATCCATATATGGAAGCTCGGAGTCGAGAGTTGAAGGAGAGAGACGTTGACAGATTGTTAAGTCTCTACAAGGATTTAGTTTTGAAGTATACAGCCTTGTGCAAAGCTATTGATTGCCTTCCAATTTCAGAGAAAGAACCAATTCTTAGACACCTAAAGATGCAGGAAACAGTCAGTCTGGTTGCACCGCAGGGCCAATGA 525 0.4 MYFQANPPQLHSNLKFIQLYRWQAKLVSEAAYYFTNLVSAMAFIVELNATSLSMDDDKFEENMEAAKLKSKLKSEEYQMIKQGEAKCSSSGKMCDEIEETRVMSLESNYPYMEARSRELKERDVDRLLSLYKDLVLKYTALCKAIDCLPISEKEPILRHLKMQETVSLVAPQGQ* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1638 174 ProSiteProfiles VPS9 domain profile. 1 53 IPR003123 -
Amo13g1638 174 PANTHER RAB GDP/GTP EXCHANGE FACTOR 4 144 IPR045046 GO:0005085|GO:0016192
Amo13g1638 174 SUPERFAMILY VPS9 domain 4 64 IPR037191 -
Amo13g1638 174 Pfam Vacuolar sorting protein 9 (VPS9) domain 4 47 IPR003123 -
Amo13g1638 174 Gene3D VPS9 domain 1 70 IPR037191 -
Amo13g1638 174 PANTHER OS03G0842700 PROTEIN 4 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1638 Amo-Chr13 22405272 22408317 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1638 K20131 - gmx:100791462 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1638 13 22405272 22408317 Amo13g1638 13 22405272 22408317 ECH