Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2088 ATGGCGCACCAGCTGATCATGGGTGCTGCAAATCAGTACCAGACATGGCGGATTCCGGCCACCAGGGTAGCACACAACGGCCAAGCGCAGTGGCCGGACGACGATCACCATCGACTGACACGGCCCATCGACGAACCAATGAAGAATTGGGACACAAAACTTCAGCATTACTTCCATCTTCACCAGCCTGATAGGTGGTACAGGACACTGCCCCCATCTGAGATGCTTCCCAGAAATGAGGCCCTGGGGGGCTACATCTTTGTGTGCAACAATGACACCATGCAAGAGGATCTTCGCCGCCAGCTCTTTGGGCTGCCACAGAAGTATAAGGACTCAGTTAGGGCAATAACCCCAGGCCTACCACTTTTCCTCTATAACTACACAGCCCATCAGTTGCATGGGGTATACCAGGCCATGAGCTTTGGGGGCTCAAATATAGACCCAACAGCATGGGAAGACAAGAAGTGCAGAGGAGAATCCAGATTTCCAGCCCAGGTTAGAATTCGAACCAAGAAGAAATGCAAACCACTAGACGAGGATGCATTTAGGCCCATTTTGTACCACTATGATGGCCCCAAGTTCAGATTGCAGCTCTCTGTGCCTGAGGCACTTGCATTACTGGACTTGTTCGAAGAGGAGGACCCATGA 648 0.5185 MAHQLIMGAANQYQTWRIPATRVAHNGQAQWPDDDHHRLTRPIDEPMKNWDTKLQHYFHLHQPDRWYRTLPPSEMLPRNEALGGYIFVCNNDTMQEDLRRQLFGLPQKYKDSVRAITPGLPLFLYNYTAHQLHGVYQAMSFGGSNIDPTAWEDKKCRGESRFPAQVRIRTKKKCKPLDEDAFRPILYHYDGPKFRLQLSVPEALALLDLFEEEDP* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2088 215 ProSiteProfiles DCD domain profile. 80 212 IPR013989 -
Vvi18g2088 215 PANTHER - 64 213 IPR044832 GO:0034976
Vvi18g2088 215 Pfam Development and cell death domain 83 210 IPR013989 -
Vvi18g2088 215 SMART dcd 80 212 IPR013989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2088 Vvi-Chr18 28949936 28951701 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2088 - - vvi:100256906 436.417