Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1269 ATGGAGGGATCAACATCATCACCGGCGTCTTCGTCCCAATCCCTCGCTTTCTACGACTTCCTGGATCGCATGCGAAACCCTGCTTCTCTCGATCTTCTTCGATCAATTAAGAGCTTCATTGTATCATTTTCATTCTATCCATGCAATCCTGAAAGTGATGGGAAAAGAGTGCAAGAGTTCTTCTCAACAACAGAAACTGCAATAAGAGATCATCCATTGTGGATGGGTGCCACTGAAGAAGAGATTGACTGTGCAATGGAGGGTTTGGAGAAATATATAATGACTAAATTGTTCTCCCGGACATTTTCTGCTTTGCCTGAGGATGGAAGGATTGATAATGACATATCAGAGAAAATGTGCTTGCTGCAAACCTTTCTGAAGCCTGAACATCTGGACATACCAGCACTTCTTCGCAATGAAGCTTCATGGCTGCTGGCTGAGAAAGAATTGAGGAAAATCAATGGTTTCAAATCTCCTCGTGAGAAACTATTGTGTATAATGAATTGTTGTAAGGTCATCAACAATCTGCTGCTCAATGCAACAATTTCTGAAAATCATGTGCCAGCTGGGGCTGATGACTTTCTCCCTGTGCTCATATATGTTACAATAAAGGCCAATCCTCCCCAATTACATTCTAACCTGAAATTCATCCAGTTGTACCGATGGCAAGCAAAACTCGTCTCAGAAGCTGCATATTATTTCACAAATCTTGTGTCAGCCATGGCATTTATAGTTGATTTAAATGCTACATCCCTTTCCATGGATGAAGACAAATTTGAGGAAAACATGGAAGCAGCCAAATTGAAGAGCAAATTAAAAAGTGAAGAATATCAGATGATCAAACAAGGGGAGGCCAAGTGCAGTTCATCAGGCAAAATGTGTGACGAAATTGAAGAGACAAGAGTTATGTCGCTTGAATCAAATTATCCATATATGGAAGCTCAGAGTCGAGAGTTGAAGGAGAGAGACGTTGACAGATTGTTAAGTCTCTACAAGGATTTAGTTTTGAAGTATACAGCCTTGTGCAAAGCTATTGATTGCCTTCCAGTTTCAGAGAAAGAACCAATTATTAGACGCCTAAAGAAGCAGGAAACAGGCAGTCTGGTTGCACCGCAGGGCCAATGA 1125 0.4124 MEGSTSSPASSSQSLAFYDFLDRMRNPASLDLLRSIKSFIVSFSFYPCNPESDGKRVQEFFSTTETAIRDHPLWMGATEEEIDCAMEGLEKYIMTKLFSRTFSALPEDGRIDNDISEKMCLLQTFLKPEHLDIPALLRNEASWLLAEKELRKINGFKSPREKLLCIMNCCKVINNLLLNATISENHVPAGADDFLPVLIYVTIKANPPQLHSNLKFIQLYRWQAKLVSEAAYYFTNLVSAMAFIVDLNATSLSMDEDKFEENMEAAKLKSKLKSEEYQMIKQGEAKCSSSGKMCDEIEETRVMSLESNYPYMEAQSRELKERDVDRLLSLYKDLVLKYTALCKAIDCLPVSEKEPIIRRLKKQETGSLVAPQGQ* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1269 374 ProSiteProfiles VPS9 domain profile. 109 253 IPR003123 -
Ahy13g1269 374 PANTHER OS03G0842700 PROTEIN 10 344 - -
Ahy13g1269 374 Gene3D VPS9 domain 106 270 IPR037191 -
Ahy13g1269 374 PANTHER RAB GDP/GTP EXCHANGE FACTOR 10 344 IPR045046 GO:0005085|GO:0016192
Ahy13g1269 374 Gene3D - 24 104 - -
Ahy13g1269 374 SMART vps9_2 142 262 IPR003123 -
Ahy13g1269 374 SUPERFAMILY VPS9 domain 16 264 IPR037191 -
Ahy13g1269 374 Pfam Vacuolar sorting protein 9 (VPS9) domain 145 246 IPR003123 -
Ahy13g1269 374 Pfam Domain of unknown function (DUF5601) 34 98 IPR041545 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1269 Ahy-Chr13 14934847 14941840 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1269 K20131 - gmx:100791462 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1269 13 14934847 14941840 Ahy13g1269 13 14934847 14941840 ECH