Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1200 Acco10g2633 . Accr4g00147 . Adu10g01584 . . . . . Ahy17g2607 . Aip07g02817 . Alju08g0152 . . . Apr1g0681 . Arst10g02053 . . . Bisa09g0813 . . . . . . . Dere12g0014 . . . Enph1g1895 . Glsi08g0859 . . . . . . . . . . . . . . . . . . . . . Lapu9g01245 . . . Lele01g0124 . Lele03g0123 . . . . . Lja1g4851 . . . . . . . Mibi05g0119 . . . Phac9g01213 . Phco7g01559 . Prci13g2166 . . . . . . . . . Pumo10g01525 . Pvu9g0429 . . . . . . . . . . . . . . . . . Vian4g01245 . Vifa2g02995 . Vimu10g01530 . Viun9g01975 . Vivi3g02648 . . .
Vvi16g1201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1203 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1204 . . . . . . . . Aev08g0808 . Ahy17g2604 Ahy16g2749 Aip07g02812 Aip06g03095 . . . Amo16g3475 Apr1g0680 . . . . . . . . Bva06g03072 . . . . . . . Dod08g1452 . . . . . . . . . . . . . Lal4g0485 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0857 . . . . . . . . . . . . . . . . . . Sto9g2758 . . . . . . . . . . . . . . . . . . .
Vvi16g1205 . . . . . . . . . . . Ahy16g2744 . Aip06g03091 . . . Amo16g3470 . . . . . . . . . . . . . . . . . Dod08g1450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0824 . . . . . . . . . . . . . . . . . . Sto9g2757 . . . . . . . . . . . . . . . . . . .
Vvi16g1206 . . . . . . . . . . Ahy17g2602 . Aip07g02811 . . . Amo17g2514 . Apr1g0679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g4850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1264 . . . . . . . . . . . . . . . . . .
Vvi16g1208 . . . . . . . . . . Ahy17g2599 . Aip07g02809 . . . Amo17g2513 . Apr1g0678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal4g0486 Lal21g0612 . . . . . . . . . . . . . . . . . . . . . Lja1g4848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2756 . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Bva Bva06g03072 Chr06 19024060 19028199 -
Vvi Vvi16g1199 Chr16 20638497 20641292 +
Vvi Vvi16g1200 Chr16 20642143 20644650 -
Acco Acco10g2633 Chr10 37041171 37050552 -
Accr Accr4g00147 Chr4 1563140 1567116 +
Adu Adu10g01584 Chr10 69856569 69860903 -
Ahy Ahy17g2607 Chr17 122571900 122574392 +
Aip Aip07g02817 Chr07 113874180 113876495 +
Alju Alju08g0152 Chr08 1198382 1204379 +
Apr Apr1g0681 Chr1 8174158 8176873 +
Arst Arst10g02053 Chr10 68988119 68992944 -
Bisa Bisa09g0813 Chr09 11734917 11741617 -
Dere Dere12g0014 Chr12 166408 170248 +
Enph Enph1g1895 Chr1 43721385 43726940 +
Glsi Glsi08g0859 Chr08 6419572 6424030 -
Lapu Lapu9g01245 Chr9 26389476 26395216 -
Lele Lele01g0124 Chr01 725542 729406 +
Lele Lele03g0123 Chr03 695231 699711 +
Lja Lja1g4851 Chr1 66202777 66206279 +
Mibi Mibi05g0119 Chr05 1417220 1422317 +
Phac Phac9g01213 Chr9 9618451 9624733 -
Phco Phco7g01559 Chr7 14830897 14836706 +
Prci Prci13g2166 Chr13 36344936 36348061 +
Pumo Pumo10g01525 Chr10 20147286 20154870 +
Pvu Pvu9g0429 Chr9 8227799 8234127 +
Vian Vian4g01245 Chr4 24998407 25003083 -
Vifa Vifa2g02995 Chr2 854887757 854890816 +
Vimu Vimu10g01530 Chr10 16964343 16969481 +
Viun Viun9g01975 Chr9 29668363 29672993 -
Vivi Vivi3g02648 Chr3 44464078 44467625 -
Vvi Vvi16g1201 Chr16 20648811 20659519 -
Vvi Vvi16g1202 Chr16 20661006 20661377 -
Vvi Vvi16g1203 Chr16 20662106 20665307 +
Vvi Vvi16g1204 Chr16 20666891 20678697 -
Aev Aev08g0808 Chr08 4670325 4680993 -
Ahy Ahy17g2604 Chr17 122527467 122538944 +
Ahy Ahy16g2749 Chr16 140351983 140364897 +
Aip Aip07g02812 Chr07 113830255 113841584 +
Aip Aip06g03095 Chr06 126243862 126256151 +
Amo Amo16g3475 Chr16 144008567 144024285 +
Apr Apr1g0680 Chr1 8160446 8173073 +
Bva Bva06g03072 Chr06 19024060 19028199 -
Dod Dod08g1452 Chr08 28697721 28713497 +
Lal Lal4g0485 Chr4 3441178 3453907 -
Psa Psa6g0857 Chr6 30213969 30225514 +
Sto Sto9g2758 Chr9 29369173 29380495 +
Vvi Vvi16g1205 Chr16 20704072 20708561 -
Ahy Ahy16g2744 Chr16 140259371 140263673 +
Aip Aip06g03091 Chr06 126154243 126158471 +
Amo Amo16g3470 Chr16 143908069 143912527 +
Dod Dod08g1450 Chr08 28424524 28439074 +
Psa Psa6g0824 Chr6 28789947 28794869 +
Sto Sto9g2757 Chr9 29351846 29353497 +
Vvi Vvi16g1206 Chr16 20709431 20726862 +
Ahy Ahy17g2602 Chr17 122449105 122453865 -
Aip Aip07g02811 Chr07 113763731 113768499 -
Amo Amo17g2514 Chr17 123148499 123152725 -
Apr Apr1g0679 Chr1 8138064 8145860 -
Lja Lja1g4850 Chr1 66168476 66176652 -
Vvi Vvi16g1207 Chr16 20727575 20733633 -
Sto Sto5g1264 Chr5 8561280 8572316 +
Vvi Vvi16g1208 Chr16 20744537 20751493 +
Ahy Ahy17g2599 Chr17 122429088 122436290 +
Aip Aip07g02809 Chr07 113744067 113750988 +
Amo Amo17g2513 Chr17 123134779 123141999 +
Apr Apr1g0678 Chr1 8113415 8122739 +
Lal Lal4g0486 Chr4 3464561 3472315 -
Lal Lal21g0612 Chr21 4619800 4623509 +
Lja Lja1g4848 Chr1 66150028 66159867 +
Sto Sto9g2756 Chr9 29341267 29348997 +