Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03095 ATGTCAAAGTCACTCTCGCTAACGTCCTCGTCTCTCAACAACCCTCAGCTGAATGGTTTCCGAAAACTCAACAATTCCCCACAGGGTCGGCTGGTGAGCCTCTCCGTCAATCGGAGCAAAGCATTCACACTATGCTCTGCTCCGGGGGACAAGAAGAGGTTCTTCGGCCCGCGGCTGCGATCAAGCGGGTCCGAGAGGTTCCTCTTGTGGCAGTTTGGTGGGCCGGGCTGGTTACCGAAGGTGGCAGTCCGGTCCGCATTCTCGGCAGTGCCAGAGAAGCCGTTGGGGCTCTATGATCCCAAAATGGATAAGGACTCGTGCGGGGTTGGGTTCGTTGCTGAATTGTCTGGTCAAAGTAGCCGCAAAACTGTAACAGATGCGTTAGAGATGTTGGTGAGAATGACGCATAGAGGTGCTTGCGGGTGCGAGGCCAACACTGGTGATGGAGCAGGGATTCTTGTGGCTCTGCCTCATGATTTTTACAAGGAGGTTGTGGAGTTTGAGCTTCCCCCCCAAGGAAATTATGCAGTTGGCATGCTTTTCTTGCCTAAATCTGATATTCGTAGGAAAGAAAGCAAAAATATATTTCAAAAGGTTGCGGAGAGTCTGGGGCACTCAGTTATTGGTTGGCGCTCCGTTCCCACAGACAACACAGGATTGGGCAAATCAGCTGTACAGACTGAACCGGTGATTGAGCAAGTGTTTCTTACTCCAAGTGCTCAATCAAAAGTTGATTTGGAAAGACAGATGTACATATTAAGGAAGCTTAGCATGGCCGCTATTACATCCGCCTTGAACCTCCAAAATGACGGCATTGCTGATTTCTATATCTGTTCACTTTCGTCAAGGACTGTTGTTTACAAAGGTCAGCTAACACCAGCTCAACTGAGGGAATATTATTTTGCGGACCTAGGCAATGAAAGGTTTACGAGCTACATGGCCCTGATACATTCACGGTTTTCTACAAATACCTTCCCTAGCTGGGATCGTGCTCAGCCTATGCAAATATTGGGACACAATGGAGAGATCAACACTCTAAGAGGCAATGTCAACTGGATGAAGGCGCGTGAGGGGTTACTGAAGTGCAAGGCACTTGGTTTATCAGAGGATGAATTAAAGAAGCTTTTGCCCATTGTCAATGCAAATTCATCTGATTCAGGAGCTTTTGATGGCGTTCTTGAGTTTTTGGTTCAATCTGGAAAAAGTCTTCCTGAAGCTGTTATGATGATGATTCCTGAGGCATGGCAAAACGATAAAAACATGGATCCTCAACGTAAAGCATTTTATGAATACTATTCAGCTCTCATGGAGCCATGGGATGGACCAGCTCTTATATCATTTACTGATGGTCACTATCTTGGAGCCACACTGGATAGGAATGGACTGCGACCTGGCCGCTTCTATGTTACTCACAGTGGACGAGTTATAATGGCAAGTGAAGTTGGAGTCGTAGACATTCCTCCTAAAGATGTGTGTAGGAAAGGAAGATTAAATCCTGGCATGATGCTTCTGGTAGATTTTGAGAAGCACATTGTTGTTGATGATGATGCCTTAAAGGAACAGTATTCGTTGGCAAGGCCCTATGGGGAGTGGCTCAAAAGACAGAAGATTGAACTCAAAGACATAGTAGATTCTGTTGATGAATCTGAAAGAGTTCCACCAACAATCGCAGGAGTGGCTCCGCTCTCTAGTGATGATGTGGATATGGAAAATATGGGAATTCATGGTCTACTGGCTCCATTGAAAGCTTTTGGATATACGGTTGAATCATTGGAAATGCTATTACTTCCTATGGCAAAAGATGGTGTAGAAGCCCTAGGGTCAATGGGAAATGATACTCCATTAGCTGTCATGTCCAATAGAGAAAAGCTCACTTTCGAGTACTTCAAGCAAATGTTTGCTCAAGTGACAAATCCTCCAATTGATCCTATTCGTGAGAAAATAGTTACTTCAATGGAATGTATGGTTGGTCCAGAAGGTGATCTGACACAAACAACAGAGGAACAATGTCACCGCCTTTCACTAAAAAGTCCCCTTTTGACCATTGAACAAATGGAAGCGATTAAAAAGATGAATTATAGAGGATGGCGGAGCAAAGTTATAGACATAACTTACTCAAAGGAATGTGGTAAGAGAGGATTGGAAGAAGCATTGGACAGGATATGTGCAGAAGCACATGGTGCAATTAGTGAAGGCTACACAACCCTTGTTCTTTCTGATAGAGCTTTCTCGAGGAAACGTGTTGCTGTGAGCTCCCTCCTGGCCGTTGGTGCTGTCCATCAACATCTTGTTAAAATGCACCATTTCTGCACACTTGTCGGTTTTGGTGCTGATGCTATATGCCCTTATTTGGCTGTGGAGGCAATATGGAGACTCCAAGTTGATGGAAGGATCCCACCTAAAGCAAGTGGTGAATTCTACTCAAAAGATGAGTTGGTCAAGAAGTACTTTAAAGCAAGCAACTATGGCATGATGAAGGTTCTTGCAAAGATGGGAATATCAACTTTGGCCTCCTACAAAGGTGCTCAGATTTTTGAAGCTCTGGGTCTTTCTTCAGAGGTGATTGAAAAGTGCTTTGCTGGAACACCTAGTCGAGTTGAGGGTGCTACATTTGAGATGCTTGCTCGGGATGCTCTACAACTGCATGCATTGGCATTTCCTACTCGGGTTTTCTCTCCTGGAAGTGCTGAAGCTGTTGCATTGCCCAATCCCGGGGATTATCATTGGAGGAAAGGTGGTGAAATTCATCTGAATGATCCGCTTGCAATAGCAAAGCTTCAGGAAGCTGCCAGAACTAACAGTATAGATGCATATAAACAGTATTCTAAGCTCATTCACGAGTTGAATAAAGCTTGCAATTTGCGGGGAATTCTGAAATTCAAAGAGATATCCACAAAGATTCCCATTGATCAAGTGGAACCATCCAGTGAAATAGTTAAACGGTTTTGCACTGGGGCCATGAGTTACGGGTCAATATCATTGGAGGCACACACAACATTAGCAATGGCTATGAATAAACTTGGAGGGAAATCAAATACAGGTGAGGGCGGTGAACAACCATCTCGTATGGAGCCTCTTCCTGATGGTTCAATGAATCCCAAAAGGAGTGCCATCAAACAAGTTGCTAGTGGAAGATTTGGAGTCTCAAGTTACTACCTTACTAATGCTGATGAACTACAGATAAAGATGGCCCAGGGTGCAAAACCTGGTGAGGGAGGTGAACTTCCTGGCCACAAAGTTATAGGAGACATTGCCATCACTAGAAATTCAACTGCTGGAGTAGGACTTATCAGTCCACCTCCCCATCATGATATTTATTCAATCGAAGACCTTGCGCAACTGATTTATGATCTAAAGAATGCCAACCCATCTGCTCGAATTAGCGTGAAGTTAGTTTCTGAAGCTGGAGTGGGGATAATTGCTAGCGGAGTTGTTAAAGGTCATGCGGACCATGTCTTGATCTCAGGTCATGATGGAGGTACAGGGGCATCTAGATGGACCGGCATAAAGAATGCTGGGCTGCCTTGGGAACTTGGCCTAGCTGAGACTCACCAGACATTGGTTGCAAATGACCTACGTGGTCGCACAGTTCTTCAAACTGATGGCCAACTCAAAACGGGAAGAGATGTGGCCATAGCTGCTCTTCTTGGAGCAGAAGAGTTCGGTTTCAGTACTGCTCCACTCATTACTCTTGGCTGTATCATGATGCGGAAGTGTCACAAGAACACCTGTCCTGTTGGCATTGCTACCCAAGATCCAGTACTTAGAGAGAAGTTTGCCGGAGAACCTGAGCATGTTATTAACTTCTTTTTCATGGTAGCTGAAGAGATGAGAGAAATTATGTCCAACCTTGGCTTTAAAACTGTTGATGAGATGGTTGGCCGTTCAGATATGCTTGAAGTTGATAAGGAAATTGTTAAGAGCAATGAGAAACTGGAAAACCTTGACCTCTCTCTATTGCTTAGACCTGCAGCTGAACTAAGACCGGGAGCCGCACAGTGCTGTATGCAAAAACAAGATCATGGTTTGGACATGGCCTTGGATAATAAGCTCATCAGTTTGTCCAATGCTTCTTTGGAAAAGGGTCTCCCAGTATACATTGAAACTCCAATCCAGAATGTAAACCGTGCTGTGGGAACTATGCTTAGCCATGAGGTTACTAAACGATACCACTTTGCTGGTCTTCCAACTGGCACCATCCATATCAGATTTACTGGCAGTGCTGGCCAGAGCTTTGGTGCATTCCTCTGTCCTGGCATCACTTTGGAACTTGAAGGTGATGGCAACGACTATGTCGGTAAAGGATTGTCAGGAGGAAAAATTGTAGTGTATCCTCCAAAAGGAAGCAACTTTGACCCTAAGGAGAACATTGTAATTGGTAATGTGGCGCTGTATGGTGCAACCTGTGGTGAAGCATATTTCAATGGGATGGCAGCAGAAAGATTTTGTGTGCGTAACTCAGGGGCTGAGGCAGTTGTGGAAGGGGTTGGTGATCATGGATGTGAATACATGACTGGCGGGACTGTCGTTGTGCTTGGGAAAACTGGTAGAAATTTTGCTGCTGGTATGAGTGGTGGGATTGCTTATGTTCTTGATGTGGATGGAAAATTCAAATCTCGATGCAACCCCGAGCTTGTAGATTTGGATAAGGTTGAAGAGGAAGAGGATATTATTACCCTAAGAATGTTGATACAGCAACATCAACGGCACACAAATAGCATGCTTGCCAAAGAAGTTCTTGCTGATTTTGAGAATCTACTTCCTAAATTCATCAAGGTGTTCCCTAGGGAGTACAAGCGCGCTCTTGCAAATATGAAGTCTGAGCAGACCTCCAACGATACAGTAGATGATGATGAAGCGCAGGCTGTTGAGAGGGATGCATTTGAAGAGCTTAAGAAACTGGCAACTTCATCTGTGAATGAGAAGCCAAGTCAGGCTGTATCGCCCAAGAGGCCAACTCAAGTTGCTGATGCCGTTAAACATCGAGGTTTTGTTGCATATGAGCGTGAGGGTGTTCAGTATAGGGATCCTAATCTTCGGATGAATGATTGGAAGGAGGTGATGGAAAAGACAAAGCCTGGTCCCCTTTTGAAAACACAGTCTGCCCGATGCATGGACTGTGGTACTCCTTTCTGTCATCAGGAGAATTCTGGATGTCCTCTTGGAAATAAAATACCAGAGTTTAACGAATTAGTGTACCAAAATAGATGGCGGGATGCATTAGAAAGGCTTCTTGAAACAAATAACTTTCCTGAATTTACTGGTCGGGTGTGCCCTGCACCTTGTGAAGGTTCTTGTGTCCTTGGTATTATCGAAAATCCGGTATCTATTAAAAGCATTGAATGTGCCATCATAGATAAGGCTTTTGAGGAAGGTTGGATGGTGCCACGACCTCCACTTAGGAGAACTGGGAAAAGGGTTGTCATTATTGGAAGTGGACCAGCTGGTCTAGCAGCTGCTGATCAACTAAACAAAATGGGCCATACAATAACAGTGTATGAACGAGCTGATAGGATTGGAGGGCTTATGATGTATGGGGTTCCCAACATGAAAACTGACAAAGTTGATATAGTTCAACGGCGAGTCAACCTTATGGCTGAGGAAGGAGTAACTTTTGTTGTGAATGCTAACGTTGGACGTGATCCTTTGTACTCTCTTGATCGGATTCGAGAGGAGAACGATGCTATTGTCTTGGCTGTTGGAGCCACAGAACCAAGAGATCTTCCGGTGCCTGGACGTGAGCTCTCAGGAGTTCATTTTGCCATGGAGTTTCTTCATGCGAACACTAAGAGCTTGCTTGATAGCAATCTTCAGGATGGTAATTACATTTCTGCCAAGGGCAAGAAAGTTGTTGTCATAGGTGGGGGTGACACTGGTACCGATTGCATAGGGACATCCATTCGTCATGGTTGCAGTAGCATTATAAATCTCGAACTTCTTCCTGAGCCACCTCGCACAAGAGCCCCAGGAAACCCTTGGCCTCAGTGGCCTCGCATATTCCGTGTAGATTACGGGCACCAAGAAGCTGCTGCTAAATTCGGGAAAGATCCAAGATCATATGAGGTACTGACCAAGCGTTTTGTTGGAGATGAAAATGGAGTGGTGAAAGGACTTGAAGTGGTACGTGTCTGTTGGGAGAAGGATCAAACTGGCAAGTTTCAATTTAAAGAAATTGAAGGCACTGAGGAGATCATTCAAGCTGACCTAGTTTTACTAGCCATGGGCTTTCTTGGCCCTGAATATACAATTGCAAAGAAGTTGGGTATGGAGCGAGACAACCGGTCAAATTTCAAGGCTGATTATGGTCGCTTCTCAACCAGTGTCAAAGGAGTGTTTGCAGCTGGCGATTGTCGCCGGGGTCAATCCCTGGTGGTATGGGCTATTTCAGAGGGACGACAAGCCGCGGCACAAGTTGACAAGTACCTCATTAAAGAGGAAAAAGAGCACAAAGTTGTGGGGAGTAAGGATGAACTAGTCAAGAGGCAACGAGACCTCAACAAGAAGCACCAGGACAGTAGCAAACACACAGTGATTACCTAA 6540 0.4508 MSKSLSLTSSSLNNPQLNGFRKLNNSPQGRLVSLSVNRSKAFTLCSAPGDKKRFFGPRLRSSGSERFLLWQFGGPGWLPKVAVRSAFSAVPEKPLGLYDPKMDKDSCGVGFVAELSGQSSRKTVTDALEMLVRMTHRGACGCEANTGDGAGILVALPHDFYKEVVEFELPPQGNYAVGMLFLPKSDIRRKESKNIFQKVAESLGHSVIGWRSVPTDNTGLGKSAVQTEPVIEQVFLTPSAQSKVDLERQMYILRKLSMAAITSALNLQNDGIADFYICSLSSRTVVYKGQLTPAQLREYYFADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMQILGHNGEINTLRGNVNWMKAREGLLKCKALGLSEDELKKLLPIVNANSSDSGAFDGVLEFLVQSGKSLPEAVMMMIPEAWQNDKNMDPQRKAFYEYYSALMEPWDGPALISFTDGHYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPKDVCRKGRLNPGMMLLVDFEKHIVVDDDALKEQYSLARPYGEWLKRQKIELKDIVDSVDESERVPPTIAGVAPLSSDDVDMENMGIHGLLAPLKAFGYTVESLEMLLLPMAKDGVEALGSMGNDTPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMVGPEGDLTQTTEEQCHRLSLKSPLLTIEQMEAIKKMNYRGWRSKVIDITYSKECGKRGLEEALDRICAEAHGAISEGYTTLVLSDRAFSRKRVAVSSLLAVGAVHQHLVKMHHFCTLVGFGADAICPYLAVEAIWRLQVDGRIPPKASGEFYSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVEGATFEMLARDALQLHALAFPTRVFSPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARTNSIDAYKQYSKLIHELNKACNLRGILKFKEISTKIPIDQVEPSSEIVKRFCTGAMSYGSISLEAHTTLAMAMNKLGGKSNTGEGGEQPSRMEPLPDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPSARISVKLVSEAGVGIIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMVAEEMREIMSNLGFKTVDEMVGRSDMLEVDKEIVKSNEKLENLDLSLLLRPAAELRPGAAQCCMQKQDHGLDMALDNKLISLSNASLEKGLPVYIETPIQNVNRAVGTMLSHEVTKRYHFAGLPTGTIHIRFTGSAGQSFGAFLCPGITLELEGDGNDYVGKGLSGGKIVVYPPKGSNFDPKENIVIGNVALYGATCGEAYFNGMAAERFCVRNSGAEAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFKSRCNPELVDLDKVEEEEDIITLRMLIQQHQRHTNSMLAKEVLADFENLLPKFIKVFPREYKRALANMKSEQTSNDTVDDDEAQAVERDAFEELKKLATSSVNEKPSQAVSPKRPTQVADAVKHRGFVAYEREGVQYRDPNLRMNDWKEVMEKTKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWRDALERLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPLRRTGKRVVIIGSGPAGLAAADQLNKMGHTITVYERADRIGGLMMYGVPNMKTDKVDIVQRRVNLMAEEGVTFVVNANVGRDPLYSLDRIREENDAIVLAVGATEPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCSSIINLELLPEPPRTRAPGNPWPQWPRIFRVDYGHQEAAAKFGKDPRSYEVLTKRFVGDENGVVKGLEVVRVCWEKDQTGKFQFKEIEGTEEIIQADLVLLAMGFLGPEYTIAKKLGMERDNRSNFKADYGRFSTSVKGVFAAGDCRRGQSLVVWAISEGRQAAAQVDKYLIKEEKEHKVVGSKDELVKRQRDLNKKHQDSSKHTVIT 2179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03095 2179 Gene3D - 1805 1913 - -
Aip06g03095 2179 PIRSF GOGAT 78 2171 IPR012220 GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
Aip06g03095 2179 CDD GltS_FMN 920 1299 IPR002932 GO:0006537|GO:0015930|GO:0016638
Aip06g03095 2179 SUPERFAMILY alpha-helical ferredoxin 1658 1815 - -
Aip06g03095 2179 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 107 508 IPR017932 -
Aip06g03095 2179 Pfam Pyridine nucleotide-disulphide oxidoreductase 1805 2131 IPR023753 GO:0016491
Aip06g03095 2179 SUPERFAMILY FMN-linked oxidoreductases 576 1321 - -
Aip06g03095 2179 Pfam Conserved region in glutamate synthase 918 1286 IPR002932 GO:0006537|GO:0015930|GO:0016638
Aip06g03095 2179 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 107 534 IPR029055 -
Aip06g03095 2179 TIGRFAM GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1660 2145 IPR006005 GO:0006537|GO:0016639
Aip06g03095 2179 SUPERFAMILY FAD/NAD(P)-binding domain 1802 2142 IPR036188 -
Aip06g03095 2179 Gene3D Aldolase class I 903 1339 IPR013785 -
Aip06g03095 2179 PRINTS Adrenodoxin reductase family signature 1806 1828 - -
Aip06g03095 2179 PRINTS Adrenodoxin reductase family signature 1829 1842 - -
Aip06g03095 2179 PRINTS Adrenodoxin reductase family signature 1950 1964 - -
Aip06g03095 2179 PRINTS Adrenodoxin reductase family signature 1872 1882 - -
Aip06g03095 2179 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1339 1603 IPR036485 GO:0016491
Aip06g03095 2179 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 86 2148 - -
Aip06g03095 2179 Pfam Glutamate synthase central domain 581 851 IPR006982 GO:0006807|GO:0015930
Aip06g03095 2179 PANTHER GLUTAMATE SYNTHASE 1 [NADH], CHLOROPLASTIC 86 2148 - -
Aip06g03095 2179 CDD GltS 107 526 - -
Aip06g03095 2179 MobiDBLite consensus disorder prediction 1008 1031 - -
Aip06g03095 2179 Gene3D Aldolase class I 559 902 IPR013785 -
Aip06g03095 2179 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 107 543 IPR029055 -
Aip06g03095 2179 Pfam Glutamine amidotransferases class-II 107 531 IPR017932 -
Aip06g03095 2179 Gene3D - 1914 2075 IPR036188 -
Aip06g03095 2179 Gene3D - 1650 1804 IPR009051 GO:0051536
Aip06g03095 2179 CDD gltB_C 1347 1596 IPR002489 GO:0016491
Aip06g03095 2179 Pfam Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1681 1792 IPR028261 -
Aip06g03095 2179 Pfam GXGXG motif 1370 1556 IPR002489 GO:0016491
Aip06g03095 2179 Gene3D - 1343 1614 IPR036485 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03095 Aip-Chr6 126243862 126256151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03095 K00264 - gmx:100809905 3869.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03095 06 126243862 126256151 Aip06g03095 06 126243862 126256151 ECH