Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1209 . . . . . . . . . . Ahy17g2596 Ahy16g2743 Aip07g02806 Aip06g03090 . . Amo17g2510 Amo16g3469 Apr1g0676 . . . . . . . . . . . . . . . . Dod08g1446 . . . . . . . . . . . . . Lal4g0487 . . . . . . . . . . . . . . . . . . . . . . Lja1g4846 . . . . . . . . . . . . . . . . . . Psa6g0791 . . . . . . . . . . . . . . . . . . Sto9g2754 Sto5g1266 . . . . . . . . . . . . . . . . . .
Vvi16g1210 . . . . . . . . . . Ahy17g2590 Ahy16g2741 Aip07g02796 Aip06g03088 . . Amo17g2505 Amo16g3466 Apr1g0675 . . . . . . . . . . . . . . . . Dod08g1439 . . . . . . . . . . . . . Lal4g0488 . . . . . . . . . . . . . . . . . . . . . . Lja1g4845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2753 Sto5g1268 . . . . . . . . . . . . . . . . . .
Vvi16g1211 . . . . . . . . Aev08g0804 . Ahy17g2589 . Aip07g02795 . . . Amo17g2504 . Apr1g0674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal4g0489 . . . . . . . . . . . . . . . . . . . . . . Lja1g4843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2750 . . . . . . . . . . . . . . . . . . .
Vvi16g1212 . . . . . . . . . . . Ahy16g2739 . Aip06g03086 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1270 . . . . . . . . . . . . . . . . . .
Vvi16g1213 . . . . . . . . . . . Ahy16g3588 . Aip06g03854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1214 . . . . . . . . . . . Ahy16g3589 . Aip06g03855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g1209 Chr16 20769859 20783861 -
Ahy Ahy17g2596 Chr17 122340137 122348197 +
Ahy Ahy16g2743 Chr16 140249070 140257934 +
Aip Aip07g02806 Chr07 113652206 113660939 +
Aip Aip06g03090 Chr06 126146450 126152264 +
Amo Amo17g2510 Chr17 123045929 123053700 +
Amo Amo16g3469 Chr16 143897886 143906622 +
Apr Apr1g0676 Chr1 8082829 8097568 +
Dod Dod08g1446 Chr08 28224442 28233927 +
Lal Lal4g0487 Chr4 3475611 3485583 -
Lja Lja1g4846 Chr1 66095533 66106411 +
Psa Psa6g0791 Chr6 27526161 27535938 -
Sto Sto9g2754 Chr9 29329253 29338662 +
Sto Sto5g1266 Chr5 8573907 8583720 -
Vvi Vvi16g1210 Chr16 20787734 20791790 -
Ahy Ahy17g2590 Chr17 122276717 122281253 +
Ahy Ahy16g2741 Chr16 140210375 140213944 +
Aip Aip07g02796 Chr07 113579967 113583007 +
Aip Aip06g03088 Chr06 126107059 126110635 +
Amo Amo17g2505 Chr17 122982268 122986688 +
Amo Amo16g3466 Chr16 143851348 143854748 +
Apr Apr1g0675 Chr1 8070374 8076033 +
Dod Dod08g1439 Chr08 27787708 27791331 +
Lal Lal4g0488 Chr4 3488441 3492691 -
Lja Lja1g4845 Chr1 66073176 66078288 +
Sto Sto9g2753 Chr9 29323043 29326081 +
Sto Sto5g1268 Chr5 8587356 8594643 -
Vvi Vvi16g1211 Chr16 20803913 20807515 -
Aev Aev08g0804 Chr08 4649001 4650742 +
Ahy Ahy17g2589 Chr17 122212426 122214987 +
Aip Aip07g02795 Chr07 113515315 113517891 +
Amo Amo17g2504 Chr17 122917472 122920140 +
Apr Apr1g0674 Chr1 8041527 8044703 +
Lal Lal4g0489 Chr4 3495499 3504051 -
Lja Lja1g4843 Chr1 66032490 66035701 +
Sto Sto9g2750 Chr9 29297684 29300098 +
Vvi Vvi16g1212 Chr16 20812676 20816151 -
Ahy Ahy16g2739 Chr16 140095024 140122271 +
Aip Aip06g03086 Chr06 126015362 126017681 +
Sto Sto5g1270 Chr5 8625346 8629150 -
Vvi Vvi16g1213 Chr16 20826879 20829051 -
Ahy Ahy16g3588 Chr16 153488957 153491309 -
Aip Aip06g03854 Chr06 136219394 136220740 -
Vvi Vvi16g1214 Chr16 20829954 20833479 +
Ahy Ahy16g3589 Chr16 153491379 153494932 +
Aip Aip06g03855 Chr06 136221556 136225804 +
Vvi Vvi16g1215 Chr16 20837574 20840184 -
Vvi Vvi16g1216 Chr16 20842191 20843745 +
Vvi Vvi16g1217 Chr16 20848483 20851612 +
Vvi Vvi16g1218 Chr16 20871741 20872052 -