Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0857 ATGTCCAACTCTCTTTCGTTAACGTTTACGGCTCTAAACAATCCTCAGATAAACGTTATAAGTAACCCTAGCGCGCGTTTGCGTCCTTTCGCCAGAGTGCGATGTTCCGCCATGTGTGTGGAGAGGAAGAGGTGGTTGGGAACCGGTTTACGGAGGAGCGGTTCGGAACGGAGTCGGTTTTTGGAATCGGTTCGACCGGGGAGGTTGCCGAAGCTGAGAGTGGCGGTTAAGGCGTCCTTTTCGGCTGTTCCGGAGAAACCGATGGGGCTTTATGATCCGGCTTTCGATAAGGACGCGTGTGGGGTCGGATTTGTGGCGGAATTGAGCGGTCAAAGTAATCGTAATACGGTGACTGATGCGTTGGAGATGTTGGTTCGGATGACGCACAGAGGTGGTTGCGGTTGTGAAGCCAATACCGGTGACGGTGCGGGGATTCTGGTGGCTCTGCCTCACGAGTTCTACCAAGAGGTTGTGGATTTTCAGCTTCCTCCTCAAGGAAATTATGCCGTTGGCATGTTTTTCTTGCCTAGATCTGATAATCGGCGAAAGGAAAGCAAAAATATATTTAGAAAGGTTGCCGAGTCTCTTGGTCACACAGTTCTTGGTTGGCGTTCTGTGCCCACAGATAACACAGGATTGGGCAAATCAGCCCTGCTGACCGAACCAGTGATTGAACAAGTGTTTCTTACACCAAGTTCTTCCTCAAAAGTTGATTTGGAGAAGCAGATGTACATATTAAGGAAGCTCAGCATGGTTGCTATTACAGCTGCATTAAACCTCCAAAATGACGGAATTACAGATTTTTATATCTGTTCACTGTCATCAAGGACTGTTATTTACAAAGGTCAGCTAACACCAACTCAGTTGAGGGAATATTTTGCAGATCTTGGCAATGAAAGGTTTACGAGCTACATGGCCCTGATACATTCCCGTTTCTCTACAAATACTTTCCCTAGCTGGGATCGTGCTCAACCTTTTCGTGTATTGGGCCACAACGGTGAAATCAACACACTCAGAGGCAATGTTAACTGGATCAAGGCACGTGAAGGCCTACTGAAATGTGAGGAACTTGGCCTATCAGAGAATGATTTAAAGAAGTTTTTACCAATTGTGGATGCAAATTCATCAGATTCAGGGTGCTTTGACGGTGTTCTTGAGTTTTTGCTTCATTCTGGAAAAAGTCTTCCAGAAGCTGTTATGATGATGATTCCTGAAGCGTGGCAGAACGACAAGAACATGGACCCTCAGCGTAAAGCATTTTATGAATACTATTCAGCTCTGATGGAGCCATGGGACGGACCAGCTCTTATATCATTTACCGATGGCCACTATCTTGGAGCTACATTGGATAGGAATGGACTACGACCTGGCCGCTTCTATGTCACCCACAGTGGACGGGTTATAATGGCAAGTGAAGTTGGTGTTGTAGATATTCCTCCGGAAGATGTGTGCAGGAAAGGAAGACTAAATCCTGGTATGATGCTTCTGGTGGATTTTGAGAAGCATATAGTTGTGAACGACGATGCCTTAAAAGAGCAATACTCATTGGCAAGACCCTATGGGGATTGGCTTAAAAATCAGAAGATTGAACTGAAGGACATAGTTGACTCTGTTCATGAATCTGATACTGTGCCACCAGCCATATCAGGAGTGGCTCCACTATCTAATGATGATGTAGATATGGAAAGTATGGGACTTCATGGTTTGCTGGCTCCATTGAAAGCTTTTGGGTATTCTATTGAATCATTGGAAATGCTATTACTTCCCATGGCAAAAGATGGTGTAGAAGCACTTGGGTCAATGGGAAATGATACTCCATTAGCTGTCATGTCTAATAGAGAAAAACTTACTTTTGAGTATTTCAAACAAATGTTTGCTCAAGTGACAAATCCTCCTATAGATCCTATTAGAGAGAAAATAGTCACTTCTACGCAATGTATGGTTGGTCCAGAAGGGGATCTGACAGAAACCACTGAGGAACAATGCCACCGCCTTTCACTAAAAGGCCCACTTTTATCCACCAAGGAAATGGAAGCCATTAAAAAAATGAATTATAGGGGATGGCGGAGCAAAGTCATAGACATTACTTACTCAAAGGAACGCGGTAAGAAAGGGTTGGAGGAAGCCTTAGACAGGATATGCACAGAAGCACACAATGCAATTAGTGAAGGCTACACCACCATCGTGCTTTCTGATAGAGCCTTCTCCCATAAACGTGTTGCTGTAAGCTCCCTTCTGGCCGTTGGTGCTGTTCACCAACATCTAGTTAAAACACTTGAGCGCACAAGAGTTGCCCTAATGATTGAATCTGCCGAGCCACGTGAAGTGCACCATTTCTGCACACTTGTTGGTTTCGGCGCTGATGCTATATGCCCATATTTGGCTGTAGAGGCAATTTGGCGACTGCAGGTTGATGGAAAGATCCCACCAAAAGCAAGTGGTGAATTCCACTCCAAAGATGAGTTGGTCAAGAAGTATTTCAAAGCAAGCAACTACGGAATGATGAAGGTTCTTGCCAAGATGGGAATATCAACTTTGGCCTCATATAAAGGTGCTCAGATATTTGAAGCTCTGGGTCTTTCTTCAGAAGTGATTGAAAAGTGCTTTGCCGGAACTCCAAGTCGAGTTGAGGGTGCAACATTTGAGATGCTCGCACGTGACGCACTTCAGCTGCACGAGTTGGCTTTTCCTTCTCGGATTTTCTCTCCTGGAAGTGCAGAAGCTGTAGCATTGCCCAATCCAGGAGATTATCATTGGAGAAAAGGTGGTGAAGTTCATCTGAACGATCCACTTGCTATTGCAAAGCTTCAAGAAGCTACCAGAACTAACAGTGTAGATGCATATAAACAGTATTCCAAGACCATTCATGAATTGAACAAGGCTTGCAATTTGCGAGGTCTTCTGAAATTTAAAGATACTTCAAGTAAGATTCCTATTGGTGAAGTTGAACCTGCTAGCGAAATAGTTAAACGGTTTTGCACCGGAGCCATGAGTTATGGGTCGATATCATTGGAGGCCCACACAGCATTAGCAACGGCAATGAACAAAATTGGAGGGAAATCCAACACAGGTGAGGGAGGTGAGCAACCATCTCGTATGGAGCCTCTGGCTGATGGCTCAAGGAATCCCAAAAGGAGTGCCATTAAGCAGATTGCTAGTGGGAGATTTGGAGTTTCAAGTTACTACCTTACAAATGCTGATGAACTTCAGATAAAGATGGCCCAGGGAGCAAAACCTGGTGAAGGAGGTGAACTTCCCGGCCACAAGGTTATAGGAGACATCGCTGTTACTAGGAGTTCAACAGCCGGGGTAGGGCTCATCAGTCCTCCTCCCCATCATGATATCTATTCAATTGAAGATCTTGCTCAATTAATTTACGATCTGAAGAATGCCAACCCAGCTGCTCGAATTAGTGTGAAACTAGTATCTGAAGCTGGAGTTGGGGTAATTGCTAGTGGAGTTGTTAAAGCCCATGCCGAGCATGTCTTGATCTCAGGTCACGATGGAGGTACAGGAGCATCCAGATGGACTGGCATAAAGAATGCTGGGCTTCCTTGGGAACTTGGTCTGGCCGAGACCCACCAGACATTAGTTGCTAATGACCTACGTGGTCGCACAACTCTCCAAACTGATGGGCAACTCAAAACCGGAAGAGATGTGGCTATAGCCGCTCTTCTTGGTGCAGAAGAGTATGGTTTCAGTACTGCTCCACTCATTACTCTTGGCTGCATCATGATGCGGAAGTGCCACAAGAACACCTGTCCTGTTGGGATTGCTACTCAAGATCCTGTACTTAGAGAAAAATTTGCTGGAGAACCCGAGCATGTTATTAACTTCTTTTTTATGGTGGCGGAAGAGATGAGAGAAATTATGGCCCAACTTGGGTTTAGAACAGTAAATGAAATGGTTGGCCGTTCGGATATGCTCGAAGTTGATAAAGAAGTTGTTAATGGAAATGCAAAACTTGAGAATATTGATCTCTCTCTATTGCTTAGACCTGCAGCTGAACTGCGACCAGAAGCTGCACAATACTGTGTGCAAAAGCAAGATCATGATCTGGACATGGCTTTGGATAATAAGCTTATAAGTCTGTCTAATGCTGCTTTGGAAAAGGGTCTTCCAGTATACATTGAAACACCAATTCTTAATACTAACCGTGCTGTGGGAACTATGCTTAGCCACGAGGTTACTAAGAGGTACAACTTAGCTGGTCTTCCTGCTGACACCATCCATATCCAGTTTAATGGTAGTGCAGGCCAAAGCTTTGGTGCATTCCTTTGCCCTGGCATCACTTTGGAACTTGAAGGTGATAGCAATGACTACATTGGTAAAGGATTATCAGGTGGCAAGATTGTAGTGTATCCTCCAAAAGGAAGTAATTTTGACCCCAAAGACAACATCATAATTGGAAACGTGGCACTGTATGGGGCAACACGGGGTGAGGCATATTTCAATGGGATGGCAGCAGAAAGATTTTGTGTGCGTAATTCTGGGGCTCATGCTGTAGTTGAAGGCGTTGGTGATCATGGATGCGAGTACATGACTGGCGGGACCGTTGTTATTCTTGGCAAAACTGGTAGAAATTTTGCTGCAGGTATGAGTGGTGGAATCGCATATGTTCTTGATGTGGATGGAACATTCCAGTCTCGGTGCAACCCAGAGCTTGTGGATCTGGATAAGGTTGAAGAGGAAGAGGACATTATTACTCTTAGGATGTTGATACAGCAACATCAACGTCACACAAATAGTCTGCTTGCCAAGGAAGTGCTGGTTGATTTTGACAATCTTCTACCTAAATTTGTCAAGGTGTTCCCTCGGGAGTATAAACGTGTTCTTGCAAGTATGAAGTCTGATGCAGCCTCTAAAGAGGCAGTGGAGCGTGCTGCTGCTGATGTAGATGAAAAAGATGATGATGAAGCTCAAGCAGTAGAGAAAGATGCTTTTGAAGAGCTAAAGAAGTTGGCAACTGCATCTTTGAATGAGAAACCCAGTGAGGCTCCTAAGAGGCCAAGTCAGGTCACTGATGCTGTTAAACATAGAGGCTTTGTTGCTTATGAGCGTGAGGGAGTTCAGTATAGAGATCCAAATGTTCGCCTTAATGATTGGAATGAAGTGATGATGGAGACAAAGCCGGGCCCACTTTTGAAAACACAGTCTGCCCGTTGCATGGATTGTGGCACTCCTTTTTGTCATCAAGAAAATTCCGGATGCCCTCTTGGAAATAAAATACCAGAATTTAATGAGTTGGTGTATCAAAATAGGTGGCAAGAAGCCTTAGAGAGGCTTCTTGAAACAAACAACTTTCCTGAGTTCACTGGCCGGGTGTGCCCAGCACCTTGTGAAGGTTCCTGTGTCCTTGGTATTATTGAGAATCCTGTGTCTATTAAAAACATTGAATGTGCTATCATAGACAAGGCTTTTGAGGAGGGTTGGATGGTGCCTCGACCTCCTGTCAAGAGAACTGGGAAAAGAGTAGCCATAGTTGGAAGTGGACCATCTGGCTTGGCAGCTGCTGATCAGCTAAATAAAATGGGCCATACGGTTACAGTGTTCGAAAGAGCTGATCGGATTGGGGGTCTTATGATGTATGGGGTTCCCAACATGAAAACTGACAAAGTAGATATAGTTCAAAGGCGAGTCAATCTAATGGCTGAGGAGGGAATCAATTTTGTGGTGAATGCAAATATTGGAAATGATCCTCGATATTCTCTTGAACAGCTTCGAGAGGAAAATGATGCCATTGTCTTGGCTGTTGGTGCCACAAAGCCAAGGGATCTTCCTGTACCTGGAAGGGAGCTATCAGGAGTCCATTTTGCCATGAAGTTTCTTCATGCCAACACTAAAAGCTTGCTTGATAGCAACTTACAGGATGGTAACTTCATATCCGCCAAGGGCAAGAAGGTTGTGGTCATTGGTGGGGGTGACACTGGCACAGATTGCATTGGAACATCCATTCGTCATGGTTGTACCGCCGTCGTAAATCTTGAACTTCTCCCTCAGCCACCACCCACTAGGGCCCCAGGCAACCCATGGCCTCAGTGGCCTCGCATATTCCGTGATGAAACAGGCAAGTTTCAATTTAAGGAAATTGAGGGCAGTGAGGAGGAGATAATCGAGGCTGACCTTGTTTTACTTGCTATGGGATTCCTTGGCCCTGAGTCGACTATTGCAGAAAAGCTGGGCGTGGAGCAAGACAACAGGTCAAACTTCAAGGCTGATTATGGCCGTTTCTCAACCAATGTTGATGGGGTATTTGCAGCTGGGGACTGTCGGCGGGGTCAGTCGTTGGTTGTATGGGCTATTTCAGAGGGAAGACAAGCTGCTTCCAAAGTTGACAGCTACCTCACCAAAGAAGACCAGAGTATTGATGGGAATCAGGATGAATTTGTCCAGAGGCAACATGAGCTCAACAACAAGCACAAGGGCAGCAGCAAACACACAGTGATGACTTAG 6453 0.452 MSNSLSLTFTALNNPQINVISNPSARLRPFARVRCSAMCVERKRWLGTGLRRSGSERSRFLESVRPGRLPKLRVAVKASFSAVPEKPMGLYDPAFDKDACGVGFVAELSGQSNRNTVTDALEMLVRMTHRGGCGCEANTGDGAGILVALPHEFYQEVVDFQLPPQGNYAVGMFFLPRSDNRRKESKNIFRKVAESLGHTVLGWRSVPTDNTGLGKSALLTEPVIEQVFLTPSSSSKVDLEKQMYILRKLSMVAITAALNLQNDGITDFYICSLSSRTVIYKGQLTPTQLREYFADLGNERFTSYMALIHSRFSTNTFPSWDRAQPFRVLGHNGEINTLRGNVNWIKAREGLLKCEELGLSENDLKKFLPIVDANSSDSGCFDGVLEFLLHSGKSLPEAVMMMIPEAWQNDKNMDPQRKAFYEYYSALMEPWDGPALISFTDGHYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPEDVCRKGRLNPGMMLLVDFEKHIVVNDDALKEQYSLARPYGDWLKNQKIELKDIVDSVHESDTVPPAISGVAPLSNDDVDMESMGLHGLLAPLKAFGYSIESLEMLLLPMAKDGVEALGSMGNDTPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSTQCMVGPEGDLTETTEEQCHRLSLKGPLLSTKEMEAIKKMNYRGWRSKVIDITYSKERGKKGLEEALDRICTEAHNAISEGYTTIVLSDRAFSHKRVAVSSLLAVGAVHQHLVKTLERTRVALMIESAEPREVHHFCTLVGFGADAICPYLAVEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVEGATFEMLARDALQLHELAFPSRIFSPGSAEAVALPNPGDYHWRKGGEVHLNDPLAIAKLQEATRTNSVDAYKQYSKTIHELNKACNLRGLLKFKDTSSKIPIGEVEPASEIVKRFCTGAMSYGSISLEAHTALATAMNKIGGKSNTGEGGEQPSRMEPLADGSRNPKRSAIKQIASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRSSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPAARISVKLVSEAGVGVIASGVVKAHAEHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTTLQTDGQLKTGRDVAIAALLGAEEYGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMVAEEMREIMAQLGFRTVNEMVGRSDMLEVDKEVVNGNAKLENIDLSLLLRPAAELRPEAAQYCVQKQDHDLDMALDNKLISLSNAALEKGLPVYIETPILNTNRAVGTMLSHEVTKRYNLAGLPADTIHIQFNGSAGQSFGAFLCPGITLELEGDSNDYIGKGLSGGKIVVYPPKGSNFDPKDNIIIGNVALYGATRGEAYFNGMAAERFCVRNSGAHAVVEGVGDHGCEYMTGGTVVILGKTGRNFAAGMSGGIAYVLDVDGTFQSRCNPELVDLDKVEEEEDIITLRMLIQQHQRHTNSLLAKEVLVDFDNLLPKFVKVFPREYKRVLASMKSDAASKEAVERAAADVDEKDDDEAQAVEKDAFEELKKLATASLNEKPSEAPKRPSQVTDAVKHRGFVAYEREGVQYRDPNVRLNDWNEVMMETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWQEALERLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKNIECAIIDKAFEEGWMVPRPPVKRTGKRVAIVGSGPSGLAAADQLNKMGHTVTVFERADRIGGLMMYGVPNMKTDKVDIVQRRVNLMAEEGINFVVNANIGNDPRYSLEQLREENDAIVLAVGATKPRDLPVPGRELSGVHFAMKFLHANTKSLLDSNLQDGNFISAKGKKVVVIGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRDETGKFQFKEIEGSEEEIIEADLVLLAMGFLGPESTIAEKLGVEQDNRSNFKADYGRFSTNVDGVFAAGDCRRGQSLVVWAISEGRQAASKVDSYLTKEDQSIDGNQDEFVQRQHELNNKHKGSSKHTVMT* 2151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0857 2150 PIRSF GOGAT 3 2023 IPR012220 GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
Psa6g0857 2150 PIRSF GOGAT 2019 2142 IPR012220 GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
Psa6g0857 2150 SUPERFAMILY Nucleotide-binding domain 1821 2049 - -
Psa6g0857 2150 Pfam Pyridine nucleotide-disulphide oxidoreductase 1823 1999 IPR023753 GO:0016491
Psa6g0857 2150 Pfam Pyridine nucleotide-disulphide oxidoreductase 2030 2104 IPR023753 GO:0016491
Psa6g0857 2150 Gene3D Aldolase class I 551 912 IPR013785 -
Psa6g0857 2150 SUPERFAMILY Nucleotide-binding domain 2028 2116 - -
Psa6g0857 2150 Gene3D - 1353 1624 IPR036485 GO:0016491
Psa6g0857 2150 Pfam Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1701 1810 IPR028261 -
Psa6g0857 2150 PANTHER GLUTAMATE SYNTHASE 1 [NADH], CHLOROPLASTIC 57 2023 - -
Psa6g0857 2150 PANTHER GLUTAMATE SYNTHASE 1 [NADH], CHLOROPLASTIC 2023 2122 - -
Psa6g0857 2150 CDD GltS 100 518 - -
Psa6g0857 2150 Gene3D - 2020 2117 IPR036188 -
Psa6g0857 2150 Gene3D Aldolase class I 913 1351 IPR013785 -
Psa6g0857 2150 Pfam Glutamine amidotransferases class-II 100 523 IPR017932 -
Psa6g0857 2150 Gene3D - 1668 1821 IPR009051 GO:0051536
Psa6g0857 2150 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1349 1613 IPR036485 GO:0016491
Psa6g0857 2150 Pfam Glutamate synthase central domain 573 861 IPR006982 GO:0006807|GO:0015930
Psa6g0857 2150 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 100 500 IPR017932 -
Psa6g0857 2150 CDD gltB_C 1357 1606 IPR002489 GO:0016491
Psa6g0857 2150 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 100 525 IPR029055 -
Psa6g0857 2150 Gene3D - 1932 2019 IPR036188 -
Psa6g0857 2150 Pfam GXGXG motif 1381 1566 IPR002489 GO:0016491
Psa6g0857 2150 SUPERFAMILY FMN-linked oxidoreductases 567 1333 - -
Psa6g0857 2150 Pfam Conserved region in glutamate synthase 928 1297 IPR002932 GO:0006537|GO:0015930|GO:0016638
Psa6g0857 2150 Gene3D - 1822 1931 - -
Psa6g0857 2150 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 100 535 IPR029055 -
Psa6g0857 2150 TIGRFAM GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1678 2022 IPR006005 GO:0006537|GO:0016639
Psa6g0857 2150 MobiDBLite consensus disorder prediction 1018 1043 - -
Psa6g0857 2150 PRINTS Adrenodoxin reductase family signature 1824 1846 - -
Psa6g0857 2150 PRINTS Adrenodoxin reductase family signature 1847 1860 - -
Psa6g0857 2150 PRINTS Adrenodoxin reductase family signature 1890 1900 - -
Psa6g0857 2150 PRINTS Adrenodoxin reductase family signature 1968 1982 - -
Psa6g0857 2150 CDD GltS_FMN 930 1309 IPR002932 GO:0006537|GO:0015930|GO:0016638
Psa6g0857 2150 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 57 2023 - -
Psa6g0857 2150 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 2023 2122 - -
Psa6g0857 2150 SUPERFAMILY alpha-helical ferredoxin 1676 1832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0857 Psa-Chr6 30213969 30225514 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0857 K00264 - gmx:100809905 3734.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0857 6 30213969 30225514 Psa6g0857 6 30213969 30225514 ECH