Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0680 ATGTCGTCTTATCTCTCATTTCTAACGCTTCCGGCTTGGTCGGCGAGCACTTTATCACCGGCGAACAAGAGGGCGCAGCTCAATGAGCCATGTCAAGCGAGAGCGAAGAAGTTTTTGGGAGCGCGATTGCGTTCGAGAAGCAGGGGTCTCGGTTCGGAACGGCTTCACGTTTGGCAATCGGAGGGTCCGGGGCGGTCTCCGAAGCTGAGGGTGGTGGTTCGGTCGGCGTTGTCCGCTGTGCCGAAGCAGCCGCTCGGGCTTTATGACCCAGCTATGGATAAGGACTCTTGCGGGGTGGGATTCGTGGCGGAACTATCCGGCGAAAGTAGCCGCAAAACGGTGAACGATGCTTTGGAGATGCTGGTGCGCATGAAACACAGAGGTGCTTGTGGGTGTGAACCCAACACTGGAGATGGAGCCGGGATTATGGTTGCTTTGCCTCACCAGTTTTACAAGAAGGTTGTGGATTTCGAGCTTCCGCCCCCAGGGAAATATGCAGTTGGCATGCTTTTCTTGCCTACATCTGACAGTCAAAGGGAAGAAAGCAAAAATGCATTTCAAAAGGTTGCCGAATCTCTTGGGCATTCTGTTCTTGGTTGGCGTTCTGTGCCCACTGATAACACAGGATTGGGCAAATCGGCCCTGCAGACTGAACCAGTGATCGAGCAGGTGTTTCTTACTCCAAGTACTCAATCAAAAGTTGATTTGGAAAGACAGATGTATATACTAAGGAAGCTTTCCATGGTTGCTATAACATCTGCATTAAACCTCAATTTTGATGGCATTACAGATTTCTATATCTGTTCACTTTCATCGAGGACTGTTGTTTACAAAGGTCAGTTAACACCAGCTCAATTGAAGGATTACTATTTTGCAGACCTTGGCAATGAAAGGTTTACGAGCTACATGGCCCTGATTCATTCAAGATTTTCAACAAATACTTTTCCTAGTTGGGATCGCGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAGATCAACACACTTAGAGGAAATGTTAACTGGATGAAGGCTCGTGAAGGCCTACTGAAGTGCAAGGAGCTTGGTCTGTCAGAGAATGAGTTAAAGAAGTTTTTGCCTATTGTGGATGCAAATTCATCTGATTCTGGAGCCTTTGACTGTGTCCTTGAGTTTTTGATTCAGTCTGGTAAAAGCCTTCCAGAAGCTGTTATGATGATGATTCCTGAAGCATGGCAAAATGACAAGAATATGGATCCTCAACGTAGAGCATTTTATGAATACTTCTCAGCCCTCATGGAGCCATGGGATGGGCCGGCTCTTATAGCATTTACCGATGGTCACTATCTTGGAGCAACATTAGACAGGAATGGGCTTCGACCAGGCCGCTTTTATGTCACCCACAGTGGACGAGTTATAATGGCAAGTGAAGTTGGGGTTGTAGACATTCCTCCTGAAGATGTATGGAGGAAAGGAAGACTAAATCCTGGCATGATGCTTCTGGTGGATTTTGAGAAGCATATTGTTGTAAATGATGATGCTTTAAAGGAACAGTTTTCATTGGCAAGGCCATATGGAGAATGGATCAAAAAGCAGAAGGTTGAACTCAAAGACATAGTTAATTCTGTACATGAATCTGAAAGAGAGCCACCAACCATAGAAGGAGTTGTGTCAGCATCTGGCGATGATGTGAATATGGAAAACAAGGGAATTCATGGTTTACTGGCTCCTTTGAAAGCTTTTGGATACACAGTTGAATCCTTGGAAATGTTATTACTTCCCATGGCAAAAGATGGTACAGAACCCCTTGGGTCAATGGGAAATGATACTCCATTAGCTGTCATGTCTAATAGAGAAAAGCTCACTTTTGAGTACTTCAAGCAAATGTTTGCCCAAGTGACAAACCCACCTATTGATCCTATTCGAGAGAAAATAGTCACTTCCATGGAATGTATAGTTGGTCCAGAAGGTGACTTGACAGAAATCACCGAGGCACAATGCCACCGCCTTTCCCTGAAAGGCCCCCTTTTATCCATTGAAGAAATGGAGGCCATTAAAAAGATGAATTACAGGGGATGGCAGAGCAAAGTTATAGATATAACATACTCAAAGGACTGTGGAAAGAAAGGGTTGGAGGAAGCCTTGGACAGGATATGTGCTGAAGCACATGATGCAATTAGTGATGGCTACACCACCCTTGTGCTGTCTGATAGAGCCTTCTCAAGGAAACGCGTTGCTGTGAGCTCCCTACTGGCTGTTGGTGCTGTCCATCAACATCTAGTCAAAACACTTGAGCGTACTAGAATTGCCTTAGTAGTAGAATCTGCTGAGCCACGTGAAGTGCACCATTTCTGCACACTTGTTGGCTTCGGTGCCGATGCTGTATGCCCATATTTGGCTGTGGAGGCAATTTGGCGACTGCAGGTTCATGGAAAGATCCCACCCAAAGCAAGTGGTGAATTCTACTCAAAAGATGAGCTGGTTAAGCAGTACTTCAAAGCAAGTAACTATGGAATGATGAAGGTGCTTGCGAAGATGGGAATATCTACTTTGGCCTCTTACAAAGGTGCTCAGATTTTTGAAGCCCTGGGTCTTTCATCAGAAGTGATTGACAGGTGCTTTGCTGGCACCCCAAGTCGAGTTGAGGGTGCAACATTTGAGATGCTTGCTCGTGATGCTCTTAAATTGCATGAGTTAGCATTTCCTTCTCGGATCTTCTCTCCTGGAAGTGCTGAAGCAGTAGCATTGCCAAATCCTGGGGATTATCATTGGAGAAAAGGTGGTGAAATTCACCTGAATGATCCGCTTGCCATATCAAAGCTTCAAGAGGCTGCCAGAACTAACAGCGTAGATGCATATAAACAGTACTCTAAGCTCATACACGAGTTAAATAAAGCTTGCAATTTGCGGGGACTTTTGAAATTTAAAGAGGCAGCATTGAAGATTCCCCTTGATGAAGTAGAGCCTGCTAGTGAGATAGTTAAACGGTTTTGCACTGGGGCCATGAGTTATGGATCAATATCATTGGAGGCACACACAGCATTGGCAGCTGCTATGAATAAGATTGGAGGGAAATCTAATACAGGTGAGGGAGGTGAGCAACCATCTCGTATGAAGCCTCTTCTAGATGGCTCAATGAACCCCAAAAGGAGTGCTATCAAGCAGGTTGCTAGTGGGAGGTTTGGAGTTACAAGTTACTATCTTACAAATGCTGATGAATTGCAGATAAAGATGGCCCAGGGAGCAAAACCTGGTGAGGGTGGTGAACTACCTGGCCACAAGGTTGTAGGAGACATTGCTGTCACTAGGAATTCAACTCCTGGTGTAGGACTTATCAGCCCACCTCCTCATCATGATATTTACTCCATTGAAGATCTTGCCCAATTAATTCATGATCTAAAGAATGCCAACCCTGCTGCTCGAATTAGTGTGAAGTTGGTATCTGAAGCTGGAGTTGGCATAGTTGCCAGTGGAGTTGTTAAAGGCCATGCTGATCAAGTGTTGATCTCAGGCCATGATGGAGGTACAGGAGCATCCAGATGGACTGGCATAAAGAATGCTGGTCTTCCTTGGGAACTTGGCTTGGCTGAGACCCACCAGACTTTGGTAGCTAATGACCTACGTGGTCGCACAGTTCTCCAAACTGATGGGCAACTCAAAACAGGAAGAGATGTGGCCATAGCTACTCTTCTTGGAGCAGAAGAGTTTGGTTTCAGTACAGCTCCACTCATTACTCTTGGTTGTATCATGATGCGCAAGTGCCACAAGAATACCTGCCCTGTTGGCATTGCTACACAAGATCCAGTCCTAAGAGAGAAGTTTGCTGGAGAGCCTGAGCATGTCATTAACTTCTTTTTCATGGTAGCAGAAGAAATGAGAGAAATTATGTCCCAGCTAGGGTTTCGGACAGTTAATGAGATGGTTGGCCGTTCAGATATGCTTGAGGTTGATAAAGAAGTCATTAAAAGCAATGAAAAACTGGAGAACATTGACCTCTCATTATTGCTTAGACCTGCAGCTGAACTGCGGCCAGAAGCTGCTCAATATTGTGTGCAAAAACAATATCATGGTTTGGACATGGCCTTGGATAATAAGCTCATACGTCTGTCCAATGCTGCTTTGGAAAAGGGTCTCCAGGTATACTTTGAAAGTCCAATCTATAATGTAAACCGTGCTGTGGGAACTATGCTAAGCCATGAGGTGACTAAAAAGTACCACTTAAATGGTCTTCCAACTGACACCATTCATATCAGATTTAAAGGCAGTGCAGGCCAGAGCTTTGGTGCATTCCTTTGTCCTGGCATCACTTTGGAACTTGAAGGTGATAGCAATGACTATGTTGGTAAAGGATTGTCAGGTGGCAAGATTGTAGTATATCCTGCAAAGGGGAGTACCTTTGACCCTAAGGAGAATATCGTAATTGGTAATGTGGCTCTATATGGGGCCACATCTGGTGAGGCATATTTCAATGGGATGGCAGCTGAAAGATTTTGTGTGCGTAATTCTGGGGCCAAGGCAGTTGTGGAAGGTGTTGGTGATCATGGATGTGAGTACATGACTGGTGGAGTAGTTGTTGTGCTTGGAAACACAGGCAGAAATTTTGCCGCAGGTATGAGTGGGGGAATTGCTTATGTTCTTGATATGGATGGAAAGTTCCTATCTCGCTGTAACCATGAGCTAGTAGATCTGGATAAGGTTGAAGAGGACGAGGATATTACTACTCTTAGAATGTTAATACAACAACATCAGCTTCACACAAATAGTGTGCTTGCCAAAGAAATTCTTGCTGACTTTGAGAATCTCCTTCCAAAATTTATCAAGGTGTTCCCCAAGGAGTATAAACGTGTTTTGGCAAGTATGAAATCAAAGGAAGCCTCCAAAAATGCAGCGGAATCAACCTCAAACCATGGAGAGAAGCAAGATGAAACAGAATTGGTGGAGAAAAATGCTTTTGAAGAGCTTAAGAAACTGGCTACTGCATCGTTGAATAGGAAGCCTCATCAGGCTAAATTGTCAAAGAGGCCTAGTCAAGTCACTGATCCTGTTAAACATAGAGGTTTTGTTGCTTATGAGCGTGAAGGTGTTAAGTACAGGAATCCCAATATTCGAATAAATGATTGGAAGGAAGTGATGGATGCGAGGAAGTCTGGTCCACTTATGAAAACCCAGTCAGCACGTTGCATGGACTGTGGTACTCCTTTCTGTCATCAGGAAAATTCTGGATGTCCTCTTGGTAATAAAATACCAGAATTTAATGAGTTAGTATACCAGAATAGGTGGCATGAAGCACTGGAGAGGCTTCTTGAGACAAATAACTTCCCGGAGTTTACTGGTAGGGTATGCCCAGCACCTTGTGAAGGTTCTTGTGTTCTTGGTATTATTGAGAATCCGGTATCTATTAAAAGAATAGAATGTGCTATCATAGACAAGGCTTTTGAGGAGGGTCGGATGGTACCACGACCTCCAGCTAGGAGAACTGGGAAAAGAGTGGCCATTGTTGGAAGCGGACCAGCTGGCTTGGCAGCTGCTGATCAACTGAACAAAATGGGTCATACAGTAACTGTGTATGAAAGAGATGATAGGATTGGAGGGCTTATGATGTATGGAGTTCCCAACATGAAAGCCGACAAAGTGGATATAGTTCAGCGGCGGGTCAACCTTATGGCAGAGGAGGGAGTTAACTTTGTGGTGAATGCTAATATAGGTCATGATTCTTTATACTCTCTTGATAGGCTTCGAGAGGAAAATGATGCTATTGTCTTAGCTGTAGGAGCCACGAAACCAAGGGATCTTCCAGTACCTGGGCGGGAGCTATCCGGAATTCATTTTGCTATGGAGTTTCTTCATGCAAACACTAAAAGCTTGCTTGATAGCAATCTCGAGGATGGCAACTTCATTTCTGCGAAGGGAAAGAAAGTTGTGGTCATTGGTGGGGGTGACACAGGCACTGATTGCATAGGGACATCCATTCGGCATGGGTGTAGTAGCATCACAAATCTGGAACTTCTCCCTCAGCCCCCAAAAAATAGGGCCCCAGGCAACCCTTGGCCACAGTGGCCTCGCATATACCGTTTAGACTATGGGCACCAAGAAGGTGAAGCTAAATTTGGGAAAGATCCAAGATCTTATAAGGTATTGACCAAGCGGTTTGTCGGCGATGAAAATGGAGTTGTGAAGGGACTTGAAGTGGTACGTGTTCGCTGGGAAAAGGATGAAACTGGGAAGTTTCAATTTAAGGAAATTGAGGGCTCCGAGGAGATTATTGAGGCTGACATAGTTTTATTGGCCATGGGATTCCTTGGCCCTGAGTCCACAATTACAGAAAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAGGCAGAGTATGGTCGCTTTTCAACCAGTGTTAGAGGGGTCTTTGCCGCTGGAGACTGTCGGCGTGGTCAGTCCCTGGTGGTGTGGGCAATTTCAGAGGGACGGCAAGCTGCAGCACAAGTTGACAGTTACCTCATAAATGATGAAGATACAGAGCACAACAATATTGATAGGAATCAGGGCGAACTTATCAAGGAGCAAGAGGATCTAACTAGAGGCACCGGAGCAGTAGCAAACACACGGTGA 6585 0.4504 MSSYLSFLTLPAWSASTLSPANKRAQLNEPCQARAKKFLGARLRSRSRGLGSERLHVWQSEGPGRSPKLRVVVRSALSAVPKQPLGLYDPAMDKDSCGVGFVAELSGESSRKTVNDALEMLVRMKHRGACGCEPNTGDGAGIMVALPHQFYKKVVDFELPPPGKYAVGMLFLPTSDSQREESKNAFQKVAESLGHSVLGWRSVPTDNTGLGKSALQTEPVIEQVFLTPSTQSKVDLERQMYILRKLSMVAITSALNLNFDGITDFYICSLSSRTVVYKGQLTPAQLKDYYFADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREGLLKCKELGLSENELKKFLPIVDANSSDSGAFDCVLEFLIQSGKSLPEAVMMMIPEAWQNDKNMDPQRRAFYEYFSALMEPWDGPALIAFTDGHYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPEDVWRKGRLNPGMMLLVDFEKHIVVNDDALKEQFSLARPYGEWIKKQKVELKDIVNSVHESEREPPTIEGVVSASGDDVNMENKGIHGLLAPLKAFGYTVESLEMLLLPMAKDGTEPLGSMGNDTPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECIVGPEGDLTEITEAQCHRLSLKGPLLSIEEMEAIKKMNYRGWQSKVIDITYSKDCGKKGLEEALDRICAEAHDAISDGYTTLVLSDRAFSRKRVAVSSLLAVGAVHQHLVKTLERTRIALVVESAEPREVHHFCTLVGFGADAVCPYLAVEAIWRLQVHGKIPPKASGEFYSKDELVKQYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIDRCFAGTPSRVEGATFEMLARDALKLHELAFPSRIFSPGSAEAVALPNPGDYHWRKGGEIHLNDPLAISKLQEAARTNSVDAYKQYSKLIHELNKACNLRGLLKFKEAALKIPLDEVEPASEIVKRFCTGAMSYGSISLEAHTALAAAMNKIGGKSNTGEGGEQPSRMKPLLDGSMNPKRSAIKQVASGRFGVTSYYLTNADELQIKMAQGAKPGEGGELPGHKVVGDIAVTRNSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARISVKLVSEAGVGIVASGVVKGHADQVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIATLLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMVAEEMREIMSQLGFRTVNEMVGRSDMLEVDKEVIKSNEKLENIDLSLLLRPAAELRPEAAQYCVQKQYHGLDMALDNKLIRLSNAALEKGLQVYFESPIYNVNRAVGTMLSHEVTKKYHLNGLPTDTIHIRFKGSAGQSFGAFLCPGITLELEGDSNDYVGKGLSGGKIVVYPAKGSTFDPKENIVIGNVALYGATSGEAYFNGMAAERFCVRNSGAKAVVEGVGDHGCEYMTGGVVVVLGNTGRNFAAGMSGGIAYVLDMDGKFLSRCNHELVDLDKVEEDEDITTLRMLIQQHQLHTNSVLAKEILADFENLLPKFIKVFPKEYKRVLASMKSKEASKNAAESTSNHGEKQDETELVEKNAFEELKKLATASLNRKPHQAKLSKRPSQVTDPVKHRGFVAYEREGVKYRNPNIRINDWKEVMDARKSGPLMKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWHEALERLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKRIECAIIDKAFEEGRMVPRPPARRTGKRVAIVGSGPAGLAAADQLNKMGHTVTVYERDDRIGGLMMYGVPNMKADKVDIVQRRVNLMAEEGVNFVVNANIGHDSLYSLDRLREENDAIVLAVGATKPRDLPVPGRELSGIHFAMEFLHANTKSLLDSNLEDGNFISAKGKKVVVIGGGDTGTDCIGTSIRHGCSSITNLELLPQPPKNRAPGNPWPQWPRIYRLDYGHQEGEAKFGKDPRSYKVLTKRFVGDENGVVKGLEVVRVRWEKDETGKFQFKEIEGSEEIIEADIVLLAMGFLGPESTITEKLGIERDNRSNFKAEYGRFSTSVRGVFAAGDCRRGQSLVVWAISEGRQAAAQVDSYLINDEDTEHNNIDRNQGELIKEQEDLTRGTGAVANTR* 2195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0680 2194 Pfam Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1698 1807 IPR028261 -
Apr1g0680 2194 Pfam Conserved region in glutamate synthase 926 1295 IPR002932 GO:0006537|GO:0015930|GO:0016638
Apr1g0680 2194 Gene3D Aldolase class I 549 910 IPR013785 -
Apr1g0680 2194 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 97 498 IPR017932 -
Apr1g0680 2194 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1347 1611 IPR036485 GO:0016491
Apr1g0680 2194 CDD GltS_FMN 928 1307 IPR002932 GO:0006537|GO:0015930|GO:0016638
Apr1g0680 2194 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 97 533 IPR029055 -
Apr1g0680 2194 MobiDBLite consensus disorder prediction 1615 1636 - -
Apr1g0680 2194 SUPERFAMILY FAD/NAD(P)-binding domain 1818 2158 IPR036188 -
Apr1g0680 2194 SUPERFAMILY alpha-helical ferredoxin 1675 1831 - -
Apr1g0680 2194 CDD GltS 97 516 - -
Apr1g0680 2194 Gene3D - 1820 1929 - -
Apr1g0680 2194 Coils Coil 522 542 - -
Apr1g0680 2194 Pfam Glutamine amidotransferases class-II 97 521 IPR017932 -
Apr1g0680 2194 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 75 2161 - -
Apr1g0680 2194 Gene3D - 1351 1618 IPR036485 GO:0016491
Apr1g0680 2194 SUPERFAMILY FMN-linked oxidoreductases 567 1329 - -
Apr1g0680 2194 Pfam GXGXG motif 1379 1564 IPR002489 GO:0016491
Apr1g0680 2194 PRINTS Adrenodoxin reductase family signature 1822 1844 - -
Apr1g0680 2194 PRINTS Adrenodoxin reductase family signature 1845 1858 - -
Apr1g0680 2194 PRINTS Adrenodoxin reductase family signature 1888 1898 - -
Apr1g0680 2194 PRINTS Adrenodoxin reductase family signature 1966 1980 - -
Apr1g0680 2194 Pfam Pyridine nucleotide-disulphide oxidoreductase 1821 2147 IPR023753 GO:0016491
Apr1g0680 2194 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 97 524 IPR029055 -
Apr1g0680 2194 Pfam Glutamate synthase central domain 571 859 IPR006982 GO:0006807|GO:0015930
Apr1g0680 2194 Gene3D - 1619 1819 IPR009051 GO:0051536
Apr1g0680 2194 CDD gltB_C 1355 1604 IPR002489 GO:0016491
Apr1g0680 2194 Gene3D Aldolase class I 911 1349 IPR013785 -
Apr1g0680 2194 TIGRFAM GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1676 2161 IPR006005 GO:0006537|GO:0016639
Apr1g0680 2194 PIRSF GOGAT 25 2188 IPR012220 GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
Apr1g0680 2194 PANTHER GLUTAMATE SYNTHASE 1 [NADH], CHLOROPLASTIC 75 2161 - -
Apr1g0680 2194 Gene3D - 1930 2091 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0680 Apr-Chr1 8160446 8173073 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0680 K00264 - gmx:100815931 3977.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0680 1 8160446 8173073 Apr1g0680 1 8160446 8173073 ECH