Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1204 ATGTCGGCGACGTCTGGTTCTGGTTCTGTTGTTCAAATCCGAAACAACTCTGGTTCGGGTCTTGTCCCTTCTCGGAAGCGCCCTACCTTTGCTCACCAATTCAATGTGACTCCTTTGAGTCGCTTCAATAACAAATCGAAGGGTTCGAGCTGCTATGTTTCAAAACGAACTAATGTTGTTGAGAACAAGTTTTTGGGGACCAGATTGCGGGGATGTGGATCAGAAAGGCTTCATTTTTGGCAATCGGATGGTCCTGGTCGATCGCCGAAGCTCAGAGTTGTTGTGCGGTCGGCATTGTCGCAGGTGCCGGAAAAGCCTCTCGGTCTATATGATCCGTCTTTCGATAAGGATTCTTGTGGCGTTGGGTTTGTCGCAGAATTATCGGGTGAAAGCAGCCGAAAAACGGTGACGGATGCTGTGGAGATGCTGGTGCGTATGTCTCACAGAGGTGCATGTGGCTGTGAAACAAATACTGGCGATGGAGCTGGCATTCTCGTTGGTCTTCCTCATGACTTCTTCAAGGAGGTTGCACAGGATGTTGGGTTTGAGCTACCACCCCCTGGGGAATATGCAGTGGGCATGTTCTTTTTGCCCACATCTCACACTCGAAGGGAAGAAAGCAAAAATGTATTTACAAAGGTTGCGGAATCTCTTGGGCATACAGTACTTGGGTGGCGTTCTGTCCCAACAAATAACTCAGGATTGGGCAATTCTGCTTTGCAGACAGAACCTGTTGTTGAACAGGTGTTTCTTACACCTACTCCTCGATCAAAAGCTGATTTTGAGCAACAGATGTACATACTAAGGAGGGTCTCAATGGTTGCTATCAGAGCTGCACTGAACCTCCAACATGGAGGAGTAAGGGACTTCTATATATGTTCGCTTTCCTCAAGGACTGTTGTTTACAAAGGGCAGTTAAAGCCTGATCAAGTGAAGGGATACTACTATGCAGATCTTGGCAATGAAAGGTTTACGAGCTACATGGCCCTGATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCAATGTAAACTGGATGAAGGCACGTGAGGGTCTATTGAAGTGCAAGGAACTTGGCCTATCAAAGAATGAGATGAAGAAGCTTCTACCCATTGTAGATGCCAGCTCATCTGATTCAGGAGCTTTTGATGGCGTTCTTGAGCTTCTGGTTCGAGCAGGTAGAAGTCTCCCCGAAGCTGTCATGATGATGATACCTGAAGCATGGCAAAATGACAAGAATATGGATCCTGATCGAAAGGCCTTGTATGAATATTTCTCAGCTCTAATGGAGCCATGGGATGGGCCTGCTCTTATATCATTTACTGATGGGCGCTATCTTGGAGCTACATTGGATCGCAATGGATTGCGTCCTGGTCGGTTTTATGTAACTCATAGTGGACGGGTTATAATGGCCAGTGAAGTTGGTGTTGTAGACATTGCTCCTGAAGATGTGCGCAGAAAAGGAAGACTTAACCCTGGCATGATGCTTCTGGTGGATTTTGAGAATCATGTTGTTGTAGATGATGAAGCCCTGAAGCAGCAGTATTCACTAGCTAGACCTTATGGGGAGTGGCTTAAACGGCAAAAGATAGAACTAAAGGATATTGTGGAATCTGTTCATGAATCTGACAAGGTCTCTCCCACTATTGCAGGGGTGATGCCAGCATCTAACCAAGATGACAGCATGGAAAACATGGGCATTTATGGTTTATTGGCTCCTTTAAAAACTTTTGGTTACACTGTTGAAGCCTTAGAGATGCTGCTGCTGCCCATGGCAAAAGATGGTACTGAGGCCCTTGGTTCAATGGGAAATGATGCTCCATTGGCTGTGATGTCAAACAGAGAAAAACTCACATTTGAGTATTTCAAACAGATGTTTGCTCAAGTCACAAACCCTCCTATTGATCCAATCCGTGAGAAGATAGTCACCTCCATGGAGTGCATGATTGGTCCAGAAGGTGATCTTACAGAAACCACTGAAGAACAATGTCATCGTCTCTCATTAAAAGGCCCTCTTCTCTCCATCCAAGAAATGGAAGCAATAAAAAAGATGAACTACAGAGGTTGGCGCAGCAAAGTTCTTGACATTACTTATTCTAAAAACCGTGGTAGGAAGGGATTGGAGGAGACCTTGGATAGGCTTTGTTCTGAAGCGCATCATGCCATTAAGCAGGGTTATACAGTGCTAGTACTTTCTGACAGAGCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGATTGTTGAATCTGCTGAGCCACGTGAAGTGCACCATTTCTGTACATTGGTTGGATTTGGTGCTGATGCTATATGCCCATATTTGGCCATAGAGGCTATTTTGAGACTACAAGTTGACGGAAAGATCCCACCTAAAGCAAGTGGTGAATTCCACTCCAAGGATGAGTTGGTCAAGAAGTACTTCAAAGCAAGCAACTATGGGATGATGAAAGTTCTTGCCAAAATGGGGATATCAACTTTGGCCTCTTACAAGGGGGCTCAGATTTTTGAAGCTGTGGGTCTTTCATCAGAAGTGATCCAGAGGTGTTTTACAGGAACTCCAAGTAGAGTCGAGGGTGCAACATTTGAAATGCTTGCACAGGATGCGCTTGAGTTGCATGAGATGGCATTTCCCACCCGGGTTTTCCCTCCAGGAAGTGCAGAGGCTGTAGCGCTGCCCAATCCTGGGGATTATCATTGGAGAAAAGGTGGTGAGGTTCACCTGAATGATCCCCTTGCCATAGCCAAGTTGCAAGATGCTGCCAGATCTAATAGTGTGGCTGCCTACAAAGAATACTCCAAGCGCATACAGGAACTGAATAAAACCTGTAATTTGCGTGGACTTTTGAAGTTCAAAGAGGCAGAAGTGAAGGTTCCTTTGGATGAAGTGGAACCAGCCAGTGAGATTGTGAAACGATTTTGTACTGGTGCCATGAGTTATGGATCAATATCATTAGAGGCACACACCACCCTGGCTATTGCTATGAACAGAATTGGAGGGAAGTCAAATACAGGTGAGGGAGGTGAGAATCCATCTCGTTTGGAGTCTCTCCCTGATGGATCATTGAATCCAAAAAGAAGTGCAATTAAGCAGGTAGCCAGTGGGAGATTCGGTGTTTCAAGTTATTACCTTACTAATGCTGATGAACTGCAGATAAAGATGGCTCAGGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCCCACCTCCGCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGTGTCGGAGTGATTGCTAGTGGAGTTGTGAAGGGACATGCTGACCATGTCTTGATCTCTGGTCATGATGGAGGTACAGGGGCTTCTCGATGGACTGGGATCAAGAATGCTGGGCTGCCATGGGAACTTGGCCTTGCTGAGACCCATCAAACTTTAGTTGCTAATGACCTTCGTGGACGCACGGTTCTCCAGACAGATGGCCAGCTGAAAACTGGCAGAGATGTAGCAATTGCTGCCCTTCTTGGTGCAGAAGAATTTGGTTTTAGCACTGCTCCCCTTATCACACTTGGGTGCATCATGATGCGAAAGTGTCACAAAAACACCTGCCCAGTTGGCATTGCAACCCAAGATCCAGTTCTTCGAGAGAAGTTTGCTGGAGAACCCGAACATGTCATTAACTTCTTCTTTATGCTAGCAGAGGAGGTAAGGGAGATTATGTCTCAGCTTGGGTTTCGAACACTCAGTGAGATGGTTGGCCGTGCAGACATGCTTGAAGTTGATAAAGAAGTGACTAAGAACAACGAGAAGGTGCAGAATATCGATCTCTCACTACTACTGAGACCTGCTGCAGATATCCGGCCAGAAGCTGCCCAGTATTGTGTACAGAAACAAGATCATGGATTGGACATGGCTTTGGACCAAAAACTCATAGCTCTGTCCAAGGCAGCTTTAGAAAAAAGTCTTCCTGTATATATTGAAACACCAATCCGCAATGTGAACCGTGCAGTTGGTACAATGCTTAGCCATGAAGTGACTAAGCGGTACCACAGTGCAGGGCTTCCAGCAGAGACTATTCATATTAAACTCAGTGGAAGTGCGGGTCAAAGTCTTGGAGCTTTTCTATGTCCTGGCATCATGCTGGAGCTTGAAGGAGACAGCAATGATTATGTTGGGAAAGGATTATCAGGTGGCAAGATTGTAGTTTATCCTCCAAGACAAAGCAAGTTTGATCCGAAGGAAAACATTGTAATTGGTAATGTGGCTCTCTATGGGGCAACAAGTGGTGAAGCATATTTCAATGGGATGGCAGCAGAAAGATTCTGCGTCCGGAATTCAGGGGCAAGAGCAGTTGTAGAAGGTGTCGGTGATCATGGTTGTGAATACATGACTGGTGGGACTGTTGTTGTGCTTGGAAAAACTGGGAGGAATTTTGCTGCAGGTATGAGCGGTGGCATTGCTTATGTTTTTGATGTGGATGAGAAGTTCAGTTCTCGGTGCAACCCTGAGCTGGTAGATCTTGACAAAGTTGAAAAAGAGGAGGATATTATGACTCTTAGAATGATGATACAACAACATCAGCGTCATACAAACAGCCAGTTAGCAAAAGAAATACTTGCTGACTTTGACAATCTTCTACCTAAATTTATCAAGGTCTTCCCCAGGGATTATAAACGGGTTATTGAAAGCATGAAACAAGAGGAGGCTTCCAAAAAGGCATTGGAGCAGGACACTCAGGAGGCTGAGGATCAAGACGAGAAAGAATTAATGGAGAAAGATGCTTTTGAAGAACTTAAGAAGCTGGCAGCTGCATCACTGAATGGGAAAAACAGTCAGAAGGTGGAAGAGGCTGAACCAGATAAGAGGCCTACTAGAGTAGCCAATGCTGTCAAACATCGAGGTTTCATTGCCTATAAGCGTGAGGGAATTTCATACAGAGATCCAAATAGCAGAATGAATGACTGGAAGGAGGTTATGGTGGAAACGAAACCTGGCCCACTTCTAAAGACCCAGTCGGCCCGTTGTATGGACTGTGGTACTCCTTTCTGCCACCAGGAGAACTCTGGATGTCCTCTTGGAAACAAAATACCCGAATTCAATGAATTGGTGCACCAAAATCGGTGGCGTGAAGCATTAGATCGGCTCCTAGAGACAAATAACTTCCCAGAGTTTACAGGAAGGGTATGTCCTGCCCCTTGTGAAGGTTCTTGCGTTCTTGGTATTATCGAAAATCCAGTATCCATCAAAAGCATTGAATGCTCCATCATAGACAAGGCCTTTGAGGAGGGCTGGATGGTGCCGCGGCCTCCCCCCAAGAGAACTGGGAAGAGAGTTGCGATTGTTGGAAGTGGACCAGCCGGGTTGGCTGCTGCTGATCAGCTAAACAGAATGGGCCATTTTGTGACAGTGTTTGAGCGTGCTGACCGAATTGGAGGTCTTATGATGTATGGTGTTCCCAACATGAAGGCTGACAAAGTGGATGTAGTTCAACGGCGCGTTAACCTTATGGCTGAGGAAGGTGTCAATTTTGTTGTGAATGCTAGTGTTGGAACAGATCCATCATACTCTCTTGACCGGCTCCGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAAATTTCTACATGCAAACACGAAAAGCTTGCTTGACAGCAACCTTGAGGATGGTAACTACATTTCTGCCAAGGGCAAGAAGGTAGTGGTGATTGGTGGAGGTGACACTGGCACAGACTGCATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGTGGCCTCGCATATTCCGTGTGGACTATGGACACCAGGAAGCTGCTGCCAAGTTCGGAAAAGACCCAAGGTCCTATGAAGTATTGACCAAGCGGTTTATTGGAGATGAGAACGGGGTCTTGAAAGGGCTTGAAGTGATTCGTGTCCAATGGGAGAAGGATGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAGGCAGATTATGGCCGCTTTGCAACCAGCGTGGAAGGGGTCTTTGCAGCAGGGGACTGCCGGCGTGGCCAGTCTCTAGTGGTCTGGGCCATCTCAGAGGGCCGGCAGGCTGCTTCACAGGTGGACAAGTTCCTCATGCGAGAAGACGAACACCTTACCAACAATTGGCAAGACGACAACATCAAGAGGCAACAAAAAAGCATCAAACACACAGTAATGACATAG 6651 0.4679 MSATSGSGSVVQIRNNSGSGLVPSRKRPTFAHQFNVTPLSRFNNKSKGSSCYVSKRTNVVENKFLGTRLRGCGSERLHFWQSDGPGRSPKLRVVVRSALSQVPEKPLGLYDPSFDKDSCGVGFVAELSGESSRKTVTDAVEMLVRMSHRGACGCETNTGDGAGILVGLPHDFFKEVAQDVGFELPPPGEYAVGMFFLPTSHTRREESKNVFTKVAESLGHTVLGWRSVPTNNSGLGNSALQTEPVVEQVFLTPTPRSKADFEQQMYILRRVSMVAIRAALNLQHGGVRDFYICSLSSRTVVYKGQLKPDQVKGYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREGLLKCKELGLSKNEMKKLLPIVDASSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPDRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIAPEDVRRKGRLNPGMMLLVDFENHVVVDDEALKQQYSLARPYGEWLKRQKIELKDIVESVHESDKVSPTIAGVMPASNQDDSMENMGIYGLLAPLKTFGYTVEALEMLLLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLTETTEEQCHRLSLKGPLLSIQEMEAIKKMNYRGWRSKVLDITYSKNRGRKGLEETLDRLCSEAHHAIKQGYTVLVLSDRAFSSKRVAVSSLLAVGAVHQHLVQKLERTQVGLIVESAEPREVHHFCTLVGFGADAICPYLAIEAILRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEAVGLSSEVIQRCFTGTPSRVEGATFEMLAQDALELHEMAFPTRVFPPGSAEAVALPNPGDYHWRKGGEVHLNDPLAIAKLQDAARSNSVAAYKEYSKRIQELNKTCNLRGLLKFKEAEVKVPLDEVEPASEIVKRFCTGAMSYGSISLEAHTTLAIAMNRIGGKSNTGEGGENPSRLESLPDGSLNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPSARVSVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEEVREIMSQLGFRTLSEMVGRADMLEVDKEVTKNNEKVQNIDLSLLLRPAADIRPEAAQYCVQKQDHGLDMALDQKLIALSKAALEKSLPVYIETPIRNVNRAVGTMLSHEVTKRYHSAGLPAETIHIKLSGSAGQSLGAFLCPGIMLELEGDSNDYVGKGLSGGKIVVYPPRQSKFDPKENIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVFDVDEKFSSRCNPELVDLDKVEKEEDIMTLRMMIQQHQRHTNSQLAKEILADFDNLLPKFIKVFPRDYKRVIESMKQEEASKKALEQDTQEAEDQDEKELMEKDAFEELKKLAAASLNGKNSQKVEEAEPDKRPTRVANAVKHRGFIAYKREGISYRDPNSRMNDWKEVMVETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKSIECSIIDKAFEEGWMVPRPPPKRTGKRVAIVGSGPAGLAAADQLNRMGHFVTVFERADRIGGLMMYGVPNMKADKVDVVQRRVNLMAEEGVNFVVNASVGTDPSYSLDRLREENDAIVLAVGATKPRDLPVPGRELSGIHFAMKFLHANTKSLLDSNLEDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCSSVVNLELLPQPPQTRAPGNPWPQWPRIFRVDYGHQEAAAKFGKDPRSYEVLTKRFIGDENGVLKGLEVIRVQWEKDASGKFQFKEVEGSQEVIEADLVLLAMGFLGPEVTVAEKLGLERDNRSNLKADYGRFATSVEGVFAAGDCRRGQSLVVWAISEGRQAASQVDKFLMREDEHLTNNWQDDNIKRQQKSIKHTVMT* 2217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1204 2216 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 119 523 IPR017932 -
Vvi16g1204 2216 Pfam Pyridine nucleotide-disulphide oxidoreductase 1850 2176 IPR023753 GO:0016491
Vvi16g1204 2216 NCBIfam glutamate synthase small subunit 1705 2190 IPR006005 GO:0006537|GO:0016639
Vvi16g1204 2216 PIRSF GOGAT 42 2215 IPR012220 GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
Vvi16g1204 2216 Pfam Glutamate synthase central domain 596 884 IPR006982 GO:0006807|GO:0015930
Vvi16g1204 2216 Gene3D - 1376 1648 IPR036485 GO:0016491
Vvi16g1204 2216 MobiDBLite consensus disorder prediction 1043 1064 - -
Vvi16g1204 2216 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1372 1637 IPR036485 GO:0016491
Vvi16g1204 2216 FunFam Glutamate synthase, large subunit 1376 1647 - -
Vvi16g1204 2216 SUPERFAMILY FAD/NAD(P)-binding domain 1847 2188 IPR036188 -
Vvi16g1204 2216 FunFam Glutamate synthase 1 [NADH] 575 935 - -
Vvi16g1204 2216 FunFam Glutamate synthase [NADH], amyloplastic 1959 2120 - -
Vvi16g1204 2216 Pfam Glutamine amidotransferases class-II 119 546 IPR017932 -
Vvi16g1204 2216 PRINTS Adrenodoxin reductase family signature 1851 1873 - -
Vvi16g1204 2216 PRINTS Adrenodoxin reductase family signature 1917 1927 - -
Vvi16g1204 2216 PRINTS Adrenodoxin reductase family signature 1995 2009 - -
Vvi16g1204 2216 PRINTS Adrenodoxin reductase family signature 1874 1887 - -
Vvi16g1204 2216 MobiDBLite consensus disorder prediction 1 23 - -
Vvi16g1204 2216 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 119 549 IPR029055 -
Vvi16g1204 2216 SUPERFAMILY FMN-linked oxidoreductases 591 1355 - -
Vvi16g1204 2216 FunFam Glutamate synthase [NADH], amyloplastic 936 1359 - -
Vvi16g1204 2216 MobiDBLite consensus disorder prediction 1642 1661 - -
Vvi16g1204 2216 CDD GltS_FMN 953 1332 IPR002932 GO:0006537|GO:0015930|GO:0016638
Vvi16g1204 2216 Gene3D Aldolase class I 936 1374 IPR013785 -
Vvi16g1204 2216 FunFam Glutamate synthase 1 [NADH] chloroplastic 1686 1849 - -
Vvi16g1204 2216 Pfam Conserved region in glutamate synthase 951 1320 IPR002932 GO:0006537|GO:0015930|GO:0016638
Vvi16g1204 2216 Pfam GXGXG motif 1403 1589 IPR002489 GO:0016491
Vvi16g1204 2216 SUPERFAMILY alpha-helical ferredoxin 1703 1860 - -
Vvi16g1204 2216 Gene3D - 1850 1957 - -
Vvi16g1204 2216 Gene3D - 1958 2120 IPR036188 -
Vvi16g1204 2216 Pfam Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1727 1837 IPR028261 -
Vvi16g1204 2216 MobiDBLite consensus disorder prediction 1 26 - -
Vvi16g1204 2216 CDD gltB_C 1380 1629 IPR002489 GO:0016491
Vvi16g1204 2216 FunFam Glutamate synthase [NADH], amyloplastic 1850 1958 - -
Vvi16g1204 2216 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 119 558 IPR029055 -
Vvi16g1204 2216 Coils Coil 1631 1665 - -
Vvi16g1204 2216 Gene3D - 1683 1849 IPR009051 GO:0051536
Vvi16g1204 2216 PANTHER GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN 182 2197 - -
Vvi16g1204 2216 FunFam Glutamate synthase 1 [NADH] chloroplastic 119 558 - -
Vvi16g1204 2216 CDD GltS 119 541 - -
Vvi16g1204 2216 Gene3D Aldolase class I 572 935 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1204 Vvi-Chr16 20666891 20678697 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1204 K00264 - vvi:100246868 4373.93