Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0624 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0625 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0626 Acco11g1881 . Accr9g00563 . Adu05g00467 . Aed11g1573 . Aev05g0827 . Ahy15g0447 . Aip05g00443 . Alju09g1882 . . . Apr7g0740 . Arst5g00591 . Bach4g00333 . Bisa11g1224 . Bva08g00387 Bva11g01922 Car08g00344 . Cca06g01645 . Dere09g0468 . Dod02g0918 . Enph13g1210 . Glsi05g1836 . Gma01g02066 Gma11g00349 . . Gso1g1741 Gso1g1741 . . . Lal16g0301 . . . Lal23g1248 . . . . . . Lapu2g00408 . Lasa2g02954 . Lele49g0456 Lele50g0492 Lele51g0474 Lele52g0492 . . . . Lja2g0153 . Mal6g1508 . Mepo5g00537 . Mesa17g00557 . Mibi12g1623 . Mtr5g0471 . Phac2g00858 . Phco4g01297 . Prci10g0729 . Psa2g3997 . Pste1g01263 . . . . . Pumo8g02134 . Pvu2g0021 . Rops1g01987 . Seca10g00533 . Spst2g00477 . Ssu2g2679 . . Sto11g1869 Tpr2g5565 . Trre9g00591 . Tsu05g00430 . Vian10g00425 . Vifa1g07647 . Vimu7g02629 . Viun2g02340 . Vivi2g03637 . Vra11g0424 .
Vvi2g0627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0630 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0622 Chr2 5409887 5410351 -
Vvi Vvi2g0623 Chr2 5412999 5419068 -
Vvi Vvi2g0624 Chr2 5432504 5432686 +
Vvi Vvi2g0625 Chr2 5436503 5449880 -
Vvi Vvi2g0626 Chr2 5471911 5475469 -
Acco Acco11g1881 Chr11 33076407 33078780 -
Accr Accr9g00563 Chr9 6484773 6487246 +
Adu Adu05g00467 Chr05 4882429 4885029 -
Aed Aed11g1573 Chr11 19883472 19893617 +
Aev Aev05g0827 Chr05 5812147 5818769 +
Ahy Ahy15g0447 Chr15 5220786 5224444 -
Aip Aip05g00443 Chr05 5000764 5003933 -
Alju Alju09g1882 Chr09 42604493 42607071 -
Apr Apr7g0740 Chr7 14298172 14302086 -
Arst Arst5g00591 Chr5 4902123 4904339 -
Bach Bach4g00333 Chr4 2163286 2165643 -
Bisa Bisa11g1224 Chr11 30869533 30872519 -
Bva Bva08g00387 Chr08 1935589 1938231 -
Bva Bva11g01922 Chr11 16557783 16558199 +
Car Car08g00344 Chr08 2701005 2704607 -
Cca Cca06g01645 Chr06 31676806 31680675 +
Dere Dere09g0468 Chr09 7534494 7537024 -
Dod Dod02g0918 Chr02 11787737 11791885 +
Enph Enph13g1210 Chr13 17944460 17948266 +
Glsi Glsi05g1836 Chr05 65990675 65994281 +
Gma Gma01g02066 Chr01 56048235 56053652 +
Gma Gma11g00349 Chr11 2797147 2802568 -
Gso Gso1g1741 Chr1 54234444 54239846 +
Gso Gso1g1741 Chr1 54234444 54239846 +
Lal Lal16g0301 Chr16 1821764 1827363 +
Lal Lal23g1248 Chr23 13626922 13632381 -
Lapu Lapu2g00408 Chr2 3328544 3332473 -
Lasa Lasa2g02954 Chr2 515212290 515215742 -
Lele Lele49g0456 Chr49 2747074 2749118 +
Lele Lele50g0492 Chr50 2917430 2919673 +
Lele Lele51g0474 Chr51 2795009 2797202 +
Lele Lele52g0492 Chr52 2988877 2991106 +
Lja Lja2g0153 Chr2 1254697 1258763 -
Mal Mal6g1508 Chr6 28066993 28071455 +
Mepo Mepo5g00537 Chr5 4676914 4681215 -
Mesa Mesa17g00557 Chr17 6432199 6435923 -
Mibi Mibi12g1623 Chr12 32125791 32128322 -
Mtr Mtr5g0471 Chr5 4318166 4322166 -
Phac Phac2g00858 Chr2 5437337 5441368 +
Phco Phco4g01297 Chr4 11117525 11121354 +
Prci Prci10g0729 Chr10 5023222 5026194 +
Psa Psa2g3997 Chr2 414958089 414961551 +
Pste Pste1g01263 Chr1 4038375 4043904 -
Pumo Pumo8g02134 Chr8 58354510 58359911 +
Pvu Pvu2g0021 Chr2 208357 212980 -
Rops Rops1g01987 Chr1 40158443 40163361 +
Seca Seca10g00533 Chr10 4719440 4721605 -
Spst Spst2g00477 Chr2 3770407 3773841 -
Ssu Ssu2g2679 Chr2 86995910 87000203 +
Sto Sto11g1869 Chr11 17432589 17435401 +
Tpr Tpr2g5565 Chr2 64357932 64361909 -
Trre Trre9g00591 Chr9 4225872 4228787 -
Tsu Tsu05g00430 Chr05 3243930 3247809 -
Vian Vian10g00425 Chr10 3821254 3824945 -
Vifa Vifa1g07647 Chr1 1187598294 1187601333 +
Vimu Vimu7g02629 Chr7 22179129 22182733 -
Viun Viun2g02340 Chr2 30646233 30650093 +
Vivi Vivi2g03637 Chr2 145729399 145733421 +
Vra Vra11g0424 Chr11 3074676 3078906 -
Vvi Vvi2g0627 Chr2 5483996 5484498 -
Vvi Vvi2g0628 Chr2 5494743 5495249 -
Vvi Vvi2g0629 Chr2 5504973 5508755 -
Vvi Vvi2g0630 Chr2 5514083 5514631 +
Vvi Vvi2g0631 Chr2 5520450 5520875 -