Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0623 ATGGCATTTTCTTCAGTCTCTCGATTACTGCCATACTCAATTCGCCACAAAAACCCTAACTTCTCAACTGCGCTGTCATCTGCGGAGAAATACTACACTCACCTGCAGAAATATGGGGATAATATCGAGAAAACCCTACCTGCGGTGAGGGCTAAATTAGACTCTTCATGTGTCAATGAGGTCTTAAATAGATGTTCCCTAACTCAGTCTCAACTGGGTCTTCGGTTTTTCATATGGGCTGGTGTCCAATCATATTATAGACACAGTTCATATTTGTATAGCAAAGCTTGTGAACTATTCAGAATTAATCAAAATCCAAGAGCCATTATTGATGTTATAGAAGCTTATAGAGTGGAGGGGACTGTGGTTAGTGTCAAGACATTTAATGTGGTTTTGCATCTATTGAGGGAAGCAAAGCTTGCTGATGAGGCATTATGGATATTGAAGAAAATGGCAGAATTTAATATAAGGGCTGACACTGTTGCGTATAACAGTGTTATACGTCTGTTTTGTGAGAAAGGTGATATGGATTTGGCTGCAGGATTGATGAAAGAGATGGGTTTAATTGATCTTTATCCTAATATGATTACTTATGTCACCATGATTAAAGGGTTCTGTAATGTGGGTCGGTTGGAGGATGCTTGTAAGTTGTTTAAGGTTATGAAAGGACATGGGTGCTCGCCCAATGTGGTCGTGTACACTGTGATTCTTGATGGGGTTTGTAGATTTGGGAGTTTGGAAAGAGCTTTGGAGTTGTTAGGGGAGATGGAGAAAGAGAGTGGTGATTGTAGTCCCAATGTTGTTACATATACATCTATGATTCAGAGTTGTTGTGAGAAGGGTAAGTTGATGGAGGCATTGGAGATTTTGGATCGAATGAGAGCTTGTGGGTGTGCTCCAAATCGGGTCACAGTTAGTATTTTGATGAAGGGGTTTTGTGCAGAGGGGCGTGTAGAGGAGGCTTTTAAATTAATTGATAAAGTTGTTGCTGGAGGTAATGTATCATACGGTGAGTGCTATAGTTCTCTTATTGTGTCATTGGTAGGGAATAAAAACCTTCAGGAGGCAGAGAAGCTCTTTAGGAGGATGTTAGCAAATGCTGTGAAGCCTGATGGTTTGGCATGTGGCACTTTGATAAAGGCGCTTTGTTTGGAGGGACGGGTCTTGGATGGGTTTCACTTATTTGATGAATTTGAGAATATGGAAGGATTGTCATACCTTGATTCTGATATTTATTCCATTCTTTTAGTTGGACTCTCTCAAAAAAGGCATTCGGTAGAAGCTGTGAAACTAGCACGGTTAATGGTTGATAGAGGAATTCAACTGAAGACTCCTTACTTTGACAGTATAGTTGAACACCTGAAGGAATCTGGAGACAAGGAGATATGCACACACTTCTGTACCCTGGCTCTGCTTTACAATGTTCTTTGGAATAAGATTCAAGCAAACTTCTGGTGGTGTGATAGGTTTGATGAGTTCATACTTCTTGGTGCTGTTCTGTTTATGTCTGATGTTTTGTGCCTAAAGTGGCTTGGTGGTCATGGAGTGGTCAGAATAAATGAGATGTAA 1569 0.4054 MAFSSVSRLLPYSIRHKNPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEICTHFCTLALLYNVLWNKIQANFWWCDRFDEFILLGAVLFMSDVLCLKWLGGHGVVRINEM* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0623 522 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 192 459 - -
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Vvi2g0623 522 NCBIfam pentatricopeptide repeat 196 230 IPR002885 -
Vvi2g0623 522 NCBIfam pentatricopeptide repeat 303 328 IPR002885 -
Vvi2g0623 522 NCBIfam pentatricopeptide repeat 268 301 IPR002885 -
Vvi2g0623 522 NCBIfam pentatricopeptide repeat 161 186 IPR002885 -
Vvi2g0623 522 NCBIfam pentatricopeptide repeat 231 266 IPR002885 -
Vvi2g0623 522 NCBIfam pentatricopeptide repeat 339 371 IPR002885 -
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vvi2g0623 522 Pfam PPR repeat 339 365 IPR002885 -
Vvi2g0623 522 Pfam PPR repeat 376 399 IPR002885 -
Vvi2g0623 522 Pfam PPR repeat 411 440 IPR002885 -
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vvi2g0623 522 Gene3D Tetratricopeptide repeat domain 190 258 IPR011990 GO:0005515
Vvi2g0623 522 Gene3D Tetratricopeptide repeat domain 259 329 IPR011990 GO:0005515
Vvi2g0623 522 Gene3D Tetratricopeptide repeat domain 30 189 IPR011990 GO:0005515
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Vvi2g0623 522 Pfam PPR repeat family 265 313 IPR002885 -
Vvi2g0623 522 Pfam PPR repeat family 193 242 IPR002885 -
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Vvi2g0623 522 Gene3D Tetratricopeptide repeat domain 336 483 IPR011990 GO:0005515
Vvi2g0623 522 Pfam PPR repeat 156 186 IPR002885 -
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 259 IPR002885 -
Vvi2g0623 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0623 150 448 Glycosyltransferase AT1G05670 30.120 7.86e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0623 - - vvi:100853058 919.842