Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0627 ATGAAAGGGGGCAAGTCATGGGGTGTGATGGTGGTCATGGTGGTGGTGCTGCTGGGTATGTGGGAGGTGAAGACGGGCAGTGCAGCAATGAGTGCAGCAGAGTGTAAGGAGGAGAGGAGGCTAGGGATTAAAGTATGCACGCCAGTGGTGTATGGGAATGATCCCACACCTGCTTGTTGCGAGAGGGTAAGGGTCACCCATGTTGAGTGTGTGTGCCCTATGATTACTCCTAAGTTGGCTCCCCTTATAGACGTCGACCGGCTTGTGCGCCTCATTAAAGGTTGTGGAAGGAAGGTCCCTCGTCACTTCAAGTGTGGGGGCATCACCACTCCTTGA 336 0.5417 MKGGKSWGVMVVMVVVLLGMWEVKTGSAAMSAAECKEERRLGIKVCTPVVYGNDPTPACCERVRVTHVECVCPMITPKLAPLIDVDRLVRLIKGCGRKVPRHFKCGGITTP* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0627 111 Pfam Probable lipid transfer 16 105 IPR016140 -
Vvi2g0627 111 Gene3D - 39 102 IPR036312 -
Vvi2g0627 111 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 10 110 - -
Vvi2g0627 111 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 43 101 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0627 Vvi-Chr2 5483996 5484498 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0627 55 111 Acyl Lipid Metabolism Gene Families AT4G33550 35.088 3.85e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0627 - - vvi:104882172 211.075