Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1234 ATGGGTTCCTCAAACAAAAAAACCATATTGGTAACAGGGGGTGCTGGTTTTATAGGCACTCACACTGTTGTTCAGCTTCTCAATGATGGTTATAATGTTTCCATCATTGATAATTTTGATAATTCTGTTATGGAAGCTGTTAATCGTATCAAGGAGGTAGTTGGTCCTCAACTTTCTAACAACCTCGAATTCACCCAGGGTGATCTTAGGAATAAGGATGACTTGGAAAACTTATTCTCCAAAACAAAGTTTGATGCAGTTATCCACTTTGCTGGATTAAAAGCTGTTGGAGAAAGTGTTGCAAATCCACGACGGTATTTTGATTTTAATTTGGTCGGCACCATAAATCTCTATCAAGTTATGGCAAAGTATAACTGTAAAAATATGGTTTTCTCATCATCTGCAACCGTTTATGGCCAACCTGAAACTATACCCTGTTTGGAGGATTTCAAATTACAAGCCATGAATCCCTATGGAAGGACCAAGCTATTCCTTGAAGAAATAGCTCGAGATATTCAGAAAGCTGAGCCGGAATGGAAGATCATTCTGCTAAGATACTTCAATCCAGTTGGAGCCCATGAAAGTGGTAAACTTGGTGAAGATCCAAGGGGAATCCCAAATAACCTTATGCCGTACATTCAGCAAGTAGCTGTTGGAAGATTGCCTGAACTCAATGTATATGGTCATGATTATCCGACCAAGGATGGCACCGCGGTCCGGGACTACATCCATGTGATGGACTTAGCAGATGGTCACATTGCGGCCCTGCGAAAGCTTTTTACCGCTGAAAACATAGGTTGTACAGCTTACAACCTAGGAACTGGTCATGGTACATCTGTGCTTGAAATGGTTACAGCATTTGAAAAAGCTTCTGGCAAGAGAATTCCAATAAAATTGTGTCCAAGGAGACCAGGAGATGCAACTGAGGTTTATGCATCTACTGAAAAAGCTGAGAAAGAACTTGGTTGGAAGGCAAAATATGGCGTGGAGGAGATGTGCAGGGACCAGTGGAATTGGGCAAAGAACAATCCATGGGGTTACAAGAGGAAAAGCCTTGAATGA 1062 0.4143 MGSSNKKTILVTGGAGFIGTHTVVQLLNDGYNVSIIDNFDNSVMEAVNRIKEVVGPQLSNNLEFTQGDLRNKDDLENLFSKTKFDAVIHFAGLKAVGESVANPRRYFDFNLVGTINLYQVMAKYNCKNMVFSSSATVYGQPETIPCLEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWKIILLRYFNPVGAHESGKLGEDPRGIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGTAVRDYIHVMDLADGHIAALRKLFTAENIGCTAYNLGTGHGTSVLEMVTAFEKASGKRIPIKLCPRRPGDATEVYASTEKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGYKRKSLE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1234 353 Gene3D - 198 340 - -
Lal16g1234 353 Gene3D - 9 280 - -
Lal16g1234 353 TIGRFAM galE: UDP-glucose 4-epimerase GalE 9 344 IPR005886 GO:0003978|GO:0006012
Lal16g1234 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 348 IPR036291 -
Lal16g1234 353 PANTHER BIFUNCTIONAL UDP-GLUCOSE 4-EPIMERASE AND UDP-XYLOSE 4-EPIMERASE 1 2 350 - -
Lal16g1234 353 CDD UDP_G4E_1_SDR_e 8 341 IPR005886 GO:0003978|GO:0006012
Lal16g1234 353 Pfam GDP-mannose 4,6 dehydratase 10 335 IPR016040 -
Lal16g1234 353 PRINTS Nucleotide sugar epimerase signature 240 255 - -
Lal16g1234 353 PRINTS Nucleotide sugar epimerase signature 267 282 - -
Lal16g1234 353 PRINTS Nucleotide sugar epimerase signature 306 323 - -
Lal16g1234 353 PANTHER UDP-GLUCOSE 4-EPIMERASE 2 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1234 Lal-Chr16 8607005 8610384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1234 8 339 Miscellaneous Gene Families AT4G00110 26.590 3.38e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1234 K01784 - gmx:100781806 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1234 16 8607005 8610384 Lal16g1234 16 8607005 8610384 ECH