Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02005 ATGGTGTCTTCCTCCCAACACATTCTGGTCACCGGTGGTGCCGGTTTCATTGGCACCCACACCGTCGTTCAGCTTCTCAAAGCTGGCTTCAGCGTTTCAATAATCGACAATTTCGATAACTCCGTCATGGAAGCAGTGGACCGCGTCCGCCAAGTGGTTGGCCCTCTGCTTTCTCAGAACCTCCAATTCACCCAGGGCGATCTCCGGAATAGGGATGACTTGGAGAAACTCTTCTCCAAAACAACATTTGATGCCGTGATCCACTTTGCTGGCTTGAAAGCGGTTGCTGAAAGCGTTGCGAAGCCCCGTCGCTATTTTGATTTTAATTTGGTTGGCACCATCAACCTCTACGAGTTTATGGCAAAGTATAATTGCAAAAAGATGGTTTTCTCATCATCTGCAACCGTTTATGGCCAACCTGAAAAGATACCGTGTGAGGAGGATTTCAAGTTACAAGCTATGAATCCCTATGGACGGACCAAGCTTTTCCTGGAAGAAATTGCCCGAGATATTCAGAAAGCTGAACCAGAATGGAAGATCATATTACTGAGATACTTCAATCCAGTTGGGGCTCATGAAAGTGGCAAACTCGGTGAAGATCCCAAGGGCATCCCAAATAACCTCATGCCTTACATTCAGCAAGTAGCTGTTGGAAGATTGACTGAACTCAATGTATACGGTCATGATTATCCAACGAGGGATGGCTCTGCGatccgggactatatccatgtgatggacttggcagatggccatattgctgccctgcgaaagctcttcacaacggagaacatagGTTGTACTGCTTACAACCTGGGAACTGGTCGTGGAACATCTGTGCTTGAAATGGTTACAGCATTTGAAAAGGCTTCTGGCAAGaaaattccagtaaaattatgtccaagaagaccgggagatgcGACTGAGGTTTATGCATCTACAGAGAGAGCTGAGAAAGAACTTGGTTGGAAGGCAAACTATGGTGTGGAGGAGATGTGCAGGGACCAATGGAATTGGGCAAAGAACAATCCCTGGGGTTACGCGGGGAAGCCTTGA 1053 0.4169 MVSSSQHILVTGGAGFIGTHTVVQLLKAGFSVSIIDNFDNSVMEAVDRVRQVVGPLLSQNLQFTQGDLRNRDDLEKLFSKTTFDAVIHFAGLKAVAESVAKPRRYFDFNLVGTINLYEFMAKYNCKKMVFSSSATVYGQPEKIPCEEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWKIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLTELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLCPRRPGDATEVYASTERAEKELGWKANYGVEEMCRDQWNWAKNNPWGYAGKP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02005 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 3 349 - -
Gma05g02005 350 PANTHER BIFUNCTIONAL UDP-GLUCOSE 4-EPIMERASE AND UDP-XYLOSE 4-EPIMERASE 1 3 349 - -
Gma05g02005 350 CDD UDP_G4E_1_SDR_e 7 340 IPR005886 GO:0003978|GO:0006012
Gma05g02005 350 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
Gma05g02005 350 PRINTS Nucleotide sugar epimerase signature 239 254 - -
Gma05g02005 350 PRINTS Nucleotide sugar epimerase signature 266 281 - -
Gma05g02005 350 PRINTS Nucleotide sugar epimerase signature 305 322 - -
Gma05g02005 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 8 343 IPR005886 GO:0003978|GO:0006012
Gma05g02005 350 Gene3D - 8 279 - -
Gma05g02005 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 346 IPR036291 -
Gma05g02005 350 Gene3D - 197 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02005 Gma-Chr5 41412346 41415363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02005 8 338 Miscellaneous Gene Families AT4G00110 27.954 8.91e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02005 K01784 - gmx:100803483 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02005 05 41412346 41415363 Gma05g02005 05 41412346 41415363 ECH