Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00088 ATGTTTTTTTTTTTATATATTCGGAACAGATTTGATGCTGTGATCCATTTTGCCGGACTCAAAGCTGTTGGAGAAAGCGTGGCTAATCCTCGATGGTATTTTGACAACAATTTGGTCGGCACGATCAATCTATATGAAGTTATGGCCAAGTACAATTGTAAGAAGATGGTTTTTTCATCATCTGCAACTGTCTATGGTCAACCTGAAAAAATACCATGTGTTGAGGATTTCAAGTTGCAAGCTATGAATCCTTATGGCCGCACCAAGCTGTTTCTTGAGGAAATAGCTCGGGATATTCAGAAGGCTGAGCCAGAATGGAGAATCATTCTTCTTAGATACTTCAATCCTGTCGGGGCTCATGAAAGTGGCAGAATTGGTGAAGATCCCAAAGGAATCCCCAGTAACCTTATGCCTTACATTCAGCAAGTAGCTGTCGGGAGATTGCCAGAACTTAATGTTTATGGCCATGATTATCCCACTCCTGATGGCACTGCGATACGGGACTACATTCATGTTATGGATTTAGCTGATGGTCACATCGCAGCCCTGCGAAAGCTTTCTGCAACTGAGAACATAGGTTGTATGGCCTACAATCTGGGGACTGGGAGAGGTACATCTGTGCTTGATATGGTGAAAGCATTTGAGAAAGTGTCTGGAAAGAAAATTCCCATTAAACTCTGTCCCAGGAGGGCAGGAGATGCTACAGCTATTTATGCTTCTACAGACAAAGCTGAAAAGGAACTTGGTTGGAAGGCAAAATACGGCGTGGAGGAAATGTGCAGGGACCAATGGAAATGGGCGAGCAACAATCCTTGGGGGTATCAGGGCAAGAAATGA 837 0.4361 MFFFLYIRNRFDAVIHFAGLKAVGESVANPRWYFDNNLVGTINLYEVMAKYNCKKMVFSSSATVYGQPEKIPCVEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWRIILLRYFNPVGAHESGRIGEDPKGIPSNLMPYIQQVAVGRLPELNVYGHDYPTPDGTAIRDYIHVMDLADGHIAALRKLSATENIGCMAYNLGTGRGTSVLDMVKAFEKVSGKKIPIKLCPRRAGDATAIYASTDKAEKELGWKAKYGVEEMCRDQWKWASNNPWGYQGKK* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00088 278 PANTHER UDP-GLUCOSE 4-EPIMERASE 10 276 - -
Pte12g00088 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 275 IPR036291 -
Pte12g00088 278 FunFam UDP-glucose 4-epimerase 4 210 278 - -
Pte12g00088 278 Gene3D - 4 121 - -
Pte12g00088 278 PRINTS Nucleotide sugar epimerase signature 167 182 - -
Pte12g00088 278 PRINTS Nucleotide sugar epimerase signature 194 209 - -
Pte12g00088 278 PRINTS Nucleotide sugar epimerase signature 233 250 - -
Pte12g00088 278 NCBIfam UDP-glucose 4-epimerase GalE 6 271 IPR005886 GO:0003978|GO:0006012
Pte12g00088 278 CDD UDP_G4E_1_SDR_e 9 266 IPR005886 GO:0003978|GO:0006012
Pte12g00088 278 Gene3D - 192 278 - -
Pte12g00088 278 Gene3D - 122 191 - -
Pte12g00088 278 Pfam GDP-mannose 4,6 dehydratase 9 262 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00088 Pte-Chr12 761281 764828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00088 11 266 Miscellaneous Gene Families AT4G00110 27.174 3.56e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00088 K01784 - cave:132173386 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00088 12 761281 764828 Pte12g00088 12 761281 764828 RCT