Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3543 ATGGTGTCGTCCAATCAAACGATACTGGTGACCGGTGGTGCCGGTTTCATCGGCACTCACACTGTGGTTCAACTCCTCAAGGGAGGTTTTAGGGTTTCAATCATTGACAATCTCGACAATTCCGTCATGGAAGCTGTTGACCGGGTCAGAGAGCTCGTCGGTCCTCACCTCTCTCAGAACCTCGAATTCAACCTCGGCGATCTCAGGAATAAGGATGACTTGGAGAAACTCTTCTCCAAAACAAAGTTTGATGCTGTTATCCACTTTGCTGCTCTTAAAGCTGTTGGAGAAAGCGTTGCCAAGCCTCGTCGCTATTTTGATTTCAATCTGGTTGGAACCATCAATCTATATGAAGTTATGGCCAAGTATAATTGCAAAAAGATGGTTTTCTCATCATCTGCAACTGTTTATGGCCAACCTGAAAAGATACCTTGCATGGAGGATTTCAAGTTACAGGCTATGAATCCCTATGGACGGACCAAGGTTTTCCTTGAAGAAATTGCTCGAGATATCCAAAAGGCTGAGCCAGAGTGGAAGATCATTTTACTGAGATACTTCAATCCAGTTGGAGCCCATGAAAGTGGTAGACTGGGTGAAGATCCCAGGGGTATCCCAAATAACCTCATGCCTTACATTCAACAAGTTGCTGTTGGAAGGCTGCCCGAACTCAATGTATACGGTCATGATTATCCCACAAAGGATGGCTCTGCGGTACGGGACTATATCCATGTGATGGACTTAGCTGATGGCCACATTGCTGCCTTGAGAAAGCTGTTCACATCGGATAACATAGGCTGTACTGCTTACAACCTGGGAACTGGCCAAGGTACATCTGTGCTTGAAATGGTTGCAGCATTTGAAAAAGCTTCTGGCAAGAAAATTCCCATAAAATTGTGTCCAAGAAGGCCGGGAGATGCTACTGAGGTATATGCATCTACAGCGAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATATGGCGTAGAGGAGATGTGCAGGGACCAATGGAATTGGGCAAAGAACAACCCGTGGGGCTACAAAGGGAAGCCTTGA 1053 0.4596 MVSSNQTILVTGGAGFIGTHTVVQLLKGGFRVSIIDNLDNSVMEAVDRVRELVGPHLSQNLEFNLGDLRNKDDLEKLFSKTKFDAVIHFAALKAVGESVAKPRRYFDFNLVGTINLYEVMAKYNCKKMVFSSSATVYGQPEKIPCMEDFKLQAMNPYGRTKVFLEEIARDIQKAEPEWKIILLRYFNPVGAHESGRLGEDPRGIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVMDLADGHIAALRKLFTSDNIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRPGDATEVYASTAKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGYKGKP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3543 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 2 349 - -
Amo13g3543 350 PRINTS Nucleotide sugar epimerase signature 239 254 - -
Amo13g3543 350 PRINTS Nucleotide sugar epimerase signature 266 281 - -
Amo13g3543 350 PRINTS Nucleotide sugar epimerase signature 305 322 - -
Amo13g3543 350 CDD UDP_G4E_1_SDR_e 7 340 IPR005886 GO:0003978|GO:0006012
Amo13g3543 350 PANTHER BIFUNCTIONAL UDP-GLUCOSE 4-EPIMERASE AND UDP-XYLOSE 4-EPIMERASE 1 2 349 - -
Amo13g3543 350 Gene3D - 197 339 - -
Amo13g3543 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 8 343 IPR005886 GO:0003978|GO:0006012
Amo13g3543 350 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
Amo13g3543 350 Gene3D - 8 279 - -
Amo13g3543 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 347 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3543 Amo-Chr13 119965603 119970712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3543 7 338 Miscellaneous Gene Families AT4G00110 27.378 5.69e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3543 K01784 - gmx:100803483 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3543 13 119965603 119970712 Amo13g3543 13 119965603 119970712 ECH